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(-) Description

Title :  STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGEN-420
 
Authors :  G. Spraggon, D. Applegate, S. J. Everse, J. -Z. Zhang, L. Veerapandian, R. F. Doolittle, G. Grieninger
Date :  22 Jun 98  (Deposition) - 19 Aug 98  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Blood Coagulation, Fibrinogen-420, Alphaec Domain, Fibrinogen Related Domain, Glycosylated Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Spraggon, D. Applegate, S. J. Everse, J. Z. Zhang, L. Veerapandian, C. Redman, R. F. Doolittle, G. Grieninger
Crystal Structure Of A Recombinant Alphaec Domain From Huma Fibrinogen-420.
Proc. Natl. Acad. Sci. Usa V. 95 9099 1998
PubMed-ID: 9689040  |  Reference-DOI: 10.1073/PNAS.95.16.9099

(-) Compounds

Molecule 1 - FIBRINOGEN-420
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemPICHIA PASTORIS
    Expression System Taxid4922
    FragmentALPHA-EC DOMAIN
    OrganBLOOD
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 40)

Asymmetric Unit (4, 40)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG19Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAG A:11 , ASN A:667 , GLU A:782 , VAL A:783 , GLY A:785 , TYR A:816 , ASN A:820 , HOH A:882BINDING SITE FOR RESIDUE NAG A 10
02AC2SOFTWARENAG A:10 , MAN A:14 , MAN A:15 , PHE A:769 , GLU A:782 , TYR A:816BINDING SITE FOR RESIDUE NAG A 11
03AC3SOFTWARENAG A:11 , MAN A:13 , MAN A:15BINDING SITE FOR RESIDUE MAN A 14
04AC4SOFTWARENAG A:11 , MAN A:14BINDING SITE FOR RESIDUE MAN A 15
05AC5SOFTWARENAG A:12 , MAN A:14BINDING SITE FOR RESIDUE MAN A 13
06AC6SOFTWAREMAN A:13BINDING SITE FOR RESIDUE NAG A 12
07AC7SOFTWARENDG B:11 , ASN B:667 , PHE B:769 , GLU B:782 , VAL B:783 , TYR B:816 , ASN B:820BINDING SITE FOR RESIDUE NAG B 10
08AC8SOFTWARENAG B:10 , MAN B:14 , MAN B:15 , TYR B:816BINDING SITE FOR RESIDUE NDG B 11
09AC9SOFTWARENDG B:11 , MAN B:13 , MAN B:15BINDING SITE FOR RESIDUE MAN B 14
10BC1SOFTWARENDG B:11 , MAN B:14BINDING SITE FOR RESIDUE MAN B 15
11BC2SOFTWARENAG B:12 , MAN B:14BINDING SITE FOR RESIDUE MAN B 13
12BC3SOFTWAREMAN B:13BINDING SITE FOR RESIDUE NAG B 12
13BC4SOFTWARENAG C:11 , HOH C:468 , ASN C:667 , PHE C:769 , GLU C:782 , VAL C:783 , GLY C:785 , TYR C:816BINDING SITE FOR RESIDUE NAG C 10
14BC5SOFTWARENAG C:10 , MAN C:14 , TYR C:816BINDING SITE FOR RESIDUE NAG C 11
15BC6SOFTWARENAG C:11 , MAN C:13 , MAN C:15BINDING SITE FOR RESIDUE MAN C 14
16BC7SOFTWAREMAN C:14BINDING SITE FOR RESIDUE MAN C 15
17BC8SOFTWARENAG C:12 , MAN C:14BINDING SITE FOR RESIDUE MAN C 13
18BC9SOFTWAREMAN C:13BINDING SITE FOR RESIDUE NAG C 12
19CC1SOFTWARENAG D:11 , HOH D:211 , ASN D:667 , PHE D:769 , GLU D:782 , TYR D:816 , ASN D:820BINDING SITE FOR RESIDUE NAG D 10
20CC2SOFTWARENAG D:10 , MAN D:14 , MAN D:15 , PHE D:769 , GLU D:782 , TYR D:816BINDING SITE FOR RESIDUE NAG D 11
21CC3SOFTWARENAG D:11 , MAN D:13 , MAN D:15BINDING SITE FOR RESIDUE MAN D 14
22CC4SOFTWARENAG D:11 , MAN D:14BINDING SITE FOR RESIDUE MAN D 15
23CC5SOFTWARENAG D:12 , MAN D:14BINDING SITE FOR RESIDUE MAN D 13
24CC6SOFTWAREMAN D:13BINDING SITE FOR RESIDUE NAG D 12
25CC7SOFTWARENAG E:11 , HOH E:263 , ASN E:667 , PHE E:769 , GLU E:782 , PRO E:815 , TYR E:816 , ASN E:820BINDING SITE FOR RESIDUE NAG E 10
26CC8SOFTWARENAG E:10 , GLU E:782 , TYR E:816BINDING SITE FOR RESIDUE NAG E 11
27CC9SOFTWARENAG F:11 , ASN F:667 , PHE F:769 , GLU F:782 , VAL F:783 , TYR F:816 , ASN F:820BINDING SITE FOR RESIDUE NAG F 10
28DC1SOFTWARENAG F:10 , GLU F:782 , TYR F:816BINDING SITE FOR RESIDUE NAG F 11
29DC2SOFTWARENAG G:11 , HOH G:346 , ASN G:667 , GLU G:782 , VAL G:783 , PRO G:815 , TYR G:816BINDING SITE FOR RESIDUE NAG G 10
30DC3SOFTWARENAG G:10 , GLU G:782 , TYR G:816BINDING SITE FOR RESIDUE NAG G 11
31DC4SOFTWARENAG H:11 , HOH H:390 , ASN H:667 , PHE H:769 , GLU H:782BINDING SITE FOR RESIDUE NAG H 10
32DC5SOFTWARENAG H:10 , GLU H:782 , PRO H:815 , TYR H:816BINDING SITE FOR RESIDUE NAG H 11
33DC6SOFTWAREASP A:772 , ASP A:774 , TRP A:776 , GLU A:778 , HOH A:871 , HOH A:895BINDING SITE FOR RESIDUE CA A 1
34DC7SOFTWAREHOH B:86 , HOH B:109 , ASP B:772 , ASP B:774 , TRP B:776 , GLU B:778BINDING SITE FOR RESIDUE CA B 1
35DC8SOFTWAREHOH B:168 , HOH C:143 , ASP C:772 , ASP C:774 , TRP C:776 , GLU C:778BINDING SITE FOR RESIDUE CA C 1
36DC9SOFTWAREHOH D:200 , HOH D:222 , ASP D:772 , ASP D:774 , TRP D:776 , GLU D:778BINDING SITE FOR RESIDUE CA D 1
37EC1SOFTWAREHOH E:253 , ASP E:772 , ASP E:774 , TRP E:776 , GLU E:778BINDING SITE FOR RESIDUE CA E 1
38EC2SOFTWAREHOH F:307 , ASP F:772 , ASP F:774 , TRP F:776 , GLU F:778BINDING SITE FOR RESIDUE CA F 1
39EC3SOFTWAREASP G:772 , ASP G:774 , TRP G:776 , GLU G:778BINDING SITE FOR RESIDUE CA G 1
40EC4SOFTWAREASP H:772 , ASP H:774 , TRP H:776 , GLU H:778BINDING SITE FOR RESIDUE CA H 1

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:780 -A:793
2B:780 -B:793
3C:780 -C:793
4D:780 -D:793
5E:780 -E:793
6F:780 -F:793
7G:780 -G:793
8H:780 -H:793

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Asn A:792 -Cys A:793
2Ser A:814 -Pro A:815
3Asn B:792 -Cys B:793
4Ser B:814 -Pro B:815
5Asn C:792 -Cys C:793
6Ser C:814 -Pro C:815
7Asn D:792 -Cys D:793
8Ser D:814 -Pro D:815
9Asn E:792 -Cys E:793
10Ser E:814 -Pro E:815
11Asn F:792 -Cys F:793
12Ser F:814 -Pro F:815
13Asn G:792 -Cys G:793
14Ser G:814 -Pro G:815
15Asn H:792 -Cys H:793
16Ser H:814 -Pro H:815

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FZD)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBA_HUMAN807-819
 
 
 
 
 
 
 
  8A:788-800
B:788-800
C:788-800
D:788-800
E:788-800
F:788-800
G:788-800
H:788-800
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBA_HUMAN807-819
 
 
 
 
 
 
 
  4A:788-800
B:788-800
C:788-800
D:788-800
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBA_HUMAN807-819
 
 
 
 
 
 
 
  4-
-
-
-
E:788-800
F:788-800
G:788-800
H:788-800

(-) Exons   (1, 8)

Asymmetric Unit (1, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003020531aENSE00001909776chr4:155511918-155511786133FIBA_HUMAN1-18180--
1.2ENST000003020532ENSE00001127292chr4:155510714-155510589126FIBA_HUMAN19-60420--
1.3ENST000003020533ENSE00001127283chr4:155510128-155509945184FIBA_HUMAN61-122620--
1.4bENST000003020534bENSE00001127274chr4:155508809-155508664146FIBA_HUMAN122-170490--
1.5bENST000003020535bENSE00001127263chr4:155508070-1555066901381FIBA_HUMAN171-6314610--
1.6ENST000003020536ENSE00001210975chr4:155505985-1555042781708FIBA_HUMAN631-8662368A:651-847
B:651-847
C:651-847
D:651-847
E:651-847
F:651-847
G:651-847
H:651-847
197
197
197
197
197
197
197
197

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzda_ A: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdA01 A:651-750,A:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdA02 A:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdA01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh................hhhhhhhh....eeeeeee.....eeeeeeeeee........eeee..................hhhh....................hhhhh.........................hhh............hhhh.......eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: A:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd A 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdb_ B: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdB01 B:651-750,B:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdB02 B:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdB01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh.eeee.....eeee..hhhhhhh....eeeeeeee.....eeeeeeeeee........eeee..................hhhh....................hhhhh.........................hhh............hhhh.......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: B:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd B 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain C from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdc_ C: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdC01 C:651-750,C:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdC02 C:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdC01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh................hhhhhhhh...eeeeeeee.....eeeeeeeeee........eeee........hhhh......hhhh....................hhhhh.........................hhh............hhhh.......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: C:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd C 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain D from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdd_ D: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdD01 D:651-750,D:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdD02 D:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdD01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh................hhhhhhhh...eeeeeeee.....eeeeeeeeee..hhh...eeee........hhhh......hhhh....................hhhhh.........................hhh............hhhh.......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: D:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd D 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain E from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzde_ E: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdE01 E:651-750,E:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdE02 E:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdE01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh................hhhhhhhh....eeeeeee.....eeeeeeeeee........eeee..................hhhh....................hhhhh.........................hhh............hhhh.......eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: E:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd E 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain F from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdf_ F: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdF01 F:651-750,F:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdF02 F:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdF01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh.eeee.....eeee..hhhhhhhh...eeeeeeee.....eeeeeeeeee..hhh...eeee..................hhhh....................hhhhh.........................hhh............hhhh.......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: F:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd F 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain G from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdg_ G: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdG01 G:651-750,G:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdG02 G:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdG01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh.eeee.....eeee..hhhhhhhh...eeeeeeee.....eeeeeeeeee..hhh...eeee..........................................hhhhh.........................hhh............hhhh.......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: G:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd G 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

Chain H from PDB  Type:PROTEIN  Length:197
 aligned with FIBA_HUMAN | P02671 from UniProtKB/Swiss-Prot  Length:866

    Alignment length:197
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       
           FIBA_HUMAN   670 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 866
               SCOP domains d1fzdh_ H: Fibrinogen C-terminal domains                                                                                                                                                              SCOP domains
               CATH domains 1fzdH01 H:651-750,H:837-847 Gamma Fibrinogen, chain A, domain 1                                     1fzdH02 H:751-836 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2               1fzdH01     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhh.eeee.....eeee..hhhhhhhh...eeeeeeee.....eeeeeeeeee..hhh...eeee..................hhhh....................hhhhh.........................hhh.......................eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_----------------------------------------------- PROSITE
               Transcript 1 Exon 1.6  PDB: H:651-847 UniProt: 631-866 [INCOMPLETE]                                                                                                                                                Transcript 1
                 1fzd H 651 GGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVELEDWAGNEAYAEYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKIRPLVTQ 847
                                   660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a1fzdA01A:651-750,A:837-847
1b1fzdB01B:651-750,B:837-847
1c1fzdC01C:651-750,C:837-847
1d1fzdD01D:651-750,D:837-847
1e1fzdE01E:651-750,E:837-847
1f1fzdF01F:651-750,F:837-847
1g1fzdG01G:651-750,G:837-847
1h1fzdH01H:651-750,H:837-847

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FZD)

(-) Gene Ontology  (61, 61)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (FIBA_HUMAN | P02671)
molecular function
    GO:0050839    cell adhesion molecule binding    Interacting selectively and non-covalently with a cell adhesion molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0002250    adaptive immune response    An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0072377    blood coagulation, common pathway    A protein activation cascade that contributes to blood coagulation and consists of events leading from the formation of activated factor X to the formation of active thrombin, the cleavage of fibrinogen by thrombin, and the formation of cleaved fibrin into a stable multimeric, cross-linked complex.
    GO:0072378    blood coagulation, fibrin clot formation    A protein activation cascade that contributes to blood coagulation and consists of the cascade of enzymatic reactions initiated by physical damage to the wall of a blood vessel, leading to the formation of a formation of a fibrin clot at the site of the injury. The process also includes numerous positive and negative regulatory events.
    GO:0007160    cell-matrix adhesion    The binding of a cell to the extracellular matrix via adhesion molecules.
    GO:0043623    cellular protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell.
    GO:0044267    cellular protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
    GO:0071345    cellular response to cytokine stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:1990643    cellular response to granulocyte colony-stimulating factor    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte colony-stimulating factor stimulus.
    GO:0071354    cellular response to interleukin-6    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-6 stimulus.
    GO:0071407    cellular response to organic cyclic compound    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0043152    induction of bacterial agglutination    Any process in which infecting bacteria are clumped together by a host organism.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0097421    liver regeneration    The regrowth of lost or destroyed liver.
    GO:2000261    negative regulation of blood coagulation, common pathway    Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation, common pathway.
    GO:2000352    negative regulation of endothelial cell apoptotic process    Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell apoptotic process.
    GO:1902042    negative regulation of extrinsic apoptotic signaling pathway via death domain receptors    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
    GO:0031639    plasminogen activation    The process in which inactive plasminogen is processed to active plasmin. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0070527    platelet aggregation    The adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0045921    positive regulation of exocytosis    Any process that activates or increases the frequency, rate or extent of exocytosis.
    GO:0034116    positive regulation of heterotypic cell-cell adhesion    Any process that activates or increases the frequency, rate, or extent of heterotypic cell-cell adhesion.
    GO:0090277    positive regulation of peptide hormone secretion    Any process that increases the rate, frequency, or extent of the regulated release of a peptide hormone from secretory granules.
    GO:0050714    positive regulation of protein secretion    Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell.
    GO:1900026    positive regulation of substrate adhesion-dependent cell spreading    Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading.
    GO:0045907    positive regulation of vasoconstriction    Any process that activates or increases the frequency, rate or extent of vasoconstriction.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0051592    response to calcium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0046898    response to cycloheximide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0033595    response to genistein    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a genistein stimulus.
    GO:0043278    response to morphine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a morphine stimulus. Morphine is an opioid alkaloid, isolated from opium, with a complex ring structure.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:1903561    extracellular vesicle    Any vesicle that is part of the extracellular region.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0031091    platelet alpha granule    A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
    GO:0031093    platelet alpha granule lumen    The volume enclosed by the membrane of the platelet alpha granule.
    GO:0005791    rough endoplasmic reticulum    The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIBA_HUMAN | P026711bbr 1dm4 1fph 1fza 1fzb 1fzc 1fze 1fzf 1fzg 1lt9 1ltj 1n86 1n8e 1re3 1re4 1rf0 1rf1 1ycp 2a45 2ffd 2h43 2hlo 2hod 2hpc 2oyh 2oyi 2q9i 2xnx 2xny 2z4e 3at0 3bvh 3e1i 3ghg 3h32 3hus 4f27 5cfa

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1FZD)