Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGE
Keywords BLOOD COAGULATION, FIBRINOGEN-420, ALPHAEC DOMAIN, FIBRINOGE DOMAIN, GLYCOSYLATED PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1FZD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FIBRINOGEN-420  A 197 1585 0
2  Protein   FIBRINOGEN-420  B 197 1585 0
3  Protein   FIBRINOGEN-420  C 197 1585 0
4  Protein   FIBRINOGEN-420  D 197 1585 0
5  Protein   FIBRINOGEN-420  E 197 1585 0
6  Protein   FIBRINOGEN-420  F 197 1585 0
7  Protein   FIBRINOGEN-420  G 197 1585 0
8  Protein   FIBRINOGEN-420  H 197 1585 0
9  Ligand    I 6 0 75
10  Ligand    J 6 0 74
11  Ligand    K 6 0 75
12  Ligand    L 6 0 75
13  Ligand    M 2 0 28
14  Ligand    N 2 0 28
15  Ligand   FIBRINOGEN-420  A 1 0 1
16  Ligand   FIBRINOGEN-420  B 1 0 1
17  Ligand   FIBRINOGEN-420  C 1 0 1
18  Ligand   FIBRINOGEN-420  D 1 0 1
19  Ligand   FIBRINOGEN-420  E 1 0 1
20  Ligand   FIBRINOGEN-420  F 1 0 1
21  Ligand   FIBRINOGEN-420  G 3 0 29
22  Ligand   FIBRINOGEN-420  H 3 0 29
23 Water     496 0 496
total       2112 12680 915

Proteins
Unit 1 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 2 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 3 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 4 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 5 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 6 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 7 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847
Unit 8 GLY651 GLY652 TRP653 LEU654 LEU655 ILE656 GLN657 GLN658 ARG659 MET660 ASP661 GLY662 SER663 LEU664 ASN665 PHE666 ASN667 ARG668 THR669 TRP670 GLN671 ASP672 TYR673 LYS674 ARG675 GLY676 PHE677 GLY678 SER679 LEU680 ASN681 ASP682 GLU683 GLY684 GLU685 GLY686 GLU687 PHE688 TRP689 LEU690 GLY691 ASN692 ASP693 TYR694 LEU695 HIS696 LEU697 LEU698 THR699 GLN700 ARG701 GLY702 SER703 VAL704 LEU705 ARG706 VAL707 GLU708 LEU709 GLU710 ASP711 TRP712 ALA713 GLY714 ASN715 GLU716 ALA717 TYR718 ALA719 GLU720 TYR721 HIS722 PHE723 ARG724 VAL725 GLY726 SER727 GLU728 ALA729 GLU730 GLY731 TYR732 ALA733 LEU734 GLN735 VAL736 SER737 SER738 TYR739 GLU740 GLY741 THR742 ALA743 GLY744 ASP745 ALA746 LEU747 ILE748 GLU749 GLY750 SER751 VAL752 GLU753 GLU754 GLY755 ALA756 GLU757 TYR758 THR759 SER760 HIS761 ASN762 ASN763 MET764 GLN765 PHE766 SER767 THR768 PHE769 ASP770 ARG771 ASP772 ALA773 ASP774 GLN775 TRP776 GLU777 GLU778 ASN779 CYS780 ALA781 GLU782 VAL783 TYR784 GLY785 GLY786 GLY787 TRP788 TRP789 TYR790 ASN791 ASN792 CYS793 GLN794 ALA795 ALA796 ASN797 LEU798 ASN799 GLY800 ILE801 TYR802 TYR803 PRO804 GLY805 GLY806 SER807 TYR808 ASP809 PRO810 ARG811 ASN812 ASN813 SER814 PRO815 TYR816 GLU817 ILE818 GLU819 ASN820 GLY821 VAL822 VAL823 TRP824 VAL825 SER826 PHE827 ARG828 GLY829 ALA830 ASP831 TYR832 SER833 LEU834 ARG835 ALA836 VAL837 ARG838 MET839 LYS840 ILE841 ARG842 PRO843 LEU844 VAL845 THR846 GLN847

Ligands
Unit 9 NAG1 NAG2 MAN3 MAN4 NAG5 MAN6
Unit 10 NAG1 NDG2 MAN3 MAN4 NAG5 MAN6
Unit 11 NAG1 NAG2 MAN3 MAN4 NAG5 MAN6
Unit 12 NAG1 NAG2 MAN3 MAN4 NAG5 MAN6
Unit 13 NAG1 NAG2
Unit 14 NAG1 NAG2
Unit 15 CA1
Unit 16 CA1
Unit 17 CA1
Unit 18 CA1
Unit 19 CA1
Unit 20 CA1
Unit 21 CA1 NAG10 NAG11
Unit 22 CA1 NAG10 NAG11

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany