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1FZD
Biol. Unit 2
Info
Asym.Unit (287 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (139 KB)
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(1)
Title
:
STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGEN-420
Authors
:
G. Spraggon, D. Applegate, S. J. Everse, J. -Z. Zhang, L. Veerapandian, R. F. Doolittle, G. Grieninger
Date
:
22 Jun 98 (Deposition) - 19 Aug 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Blood Coagulation, Fibrinogen-420, Alphaec Domain, Fibrinogen Related Domain, Glycosylated Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Spraggon, D. Applegate, S. J. Everse, J. Z. Zhang, L. Veerapandian, C. Redman, R. F. Doolittle, G. Grieninger
Crystal Structure Of A Recombinant Alphaec Domain From Huma Fibrinogen-420.
Proc. Natl. Acad. Sci. Usa V. 95 9099 1998
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(12, 12)
Info
All Sites
01: CC7 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: EC1 (SOFTWARE)
10: EC2 (SOFTWARE)
11: EC3 (SOFTWARE)
12: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC7
SOFTWARE
NAG E:11 , HOH E:263 , ASN E:667 , PHE E:769 , GLU E:782 , PRO E:815 , TYR E:816 , ASN E:820
BINDING SITE FOR RESIDUE NAG E 10
02
CC8
SOFTWARE
NAG E:10 , GLU E:782 , TYR E:816
BINDING SITE FOR RESIDUE NAG E 11
03
CC9
SOFTWARE
NAG F:11 , ASN F:667 , PHE F:769 , GLU F:782 , VAL F:783 , TYR F:816 , ASN F:820
BINDING SITE FOR RESIDUE NAG F 10
04
DC1
SOFTWARE
NAG F:10 , GLU F:782 , TYR F:816
BINDING SITE FOR RESIDUE NAG F 11
05
DC2
SOFTWARE
NAG G:11 , HOH G:346 , ASN G:667 , GLU G:782 , VAL G:783 , PRO G:815 , TYR G:816
BINDING SITE FOR RESIDUE NAG G 10
06
DC3
SOFTWARE
NAG G:10 , GLU G:782 , TYR G:816
BINDING SITE FOR RESIDUE NAG G 11
07
DC4
SOFTWARE
NAG H:11 , HOH H:390 , ASN H:667 , PHE H:769 , GLU H:782
BINDING SITE FOR RESIDUE NAG H 10
08
DC5
SOFTWARE
NAG H:10 , GLU H:782 , PRO H:815 , TYR H:816
BINDING SITE FOR RESIDUE NAG H 11
09
EC1
SOFTWARE
HOH E:253 , ASP E:772 , ASP E:774 , TRP E:776 , GLU E:778
BINDING SITE FOR RESIDUE CA E 1
10
EC2
SOFTWARE
HOH F:307 , ASP F:772 , ASP F:774 , TRP F:776 , GLU F:778
BINDING SITE FOR RESIDUE CA F 1
11
EC3
SOFTWARE
ASP G:772 , ASP G:774 , TRP G:776 , GLU G:778
BINDING SITE FOR RESIDUE CA G 1
12
EC4
SOFTWARE
ASP H:772 , ASP H:774 , TRP H:776 , GLU H:778
BINDING SITE FOR RESIDUE CA H 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_1 (E:788-800,F:788-800,G:788-800,H:78...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FIBA_HUMAN
807-819
4
-
-
-
-
E:788-800
F:788-800
G:788-800
H:788-800
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1fzda_ (A:)
1b: SCOP_d1fzdb_ (B:)
1c: SCOP_d1fzdc_ (C:)
1d: SCOP_d1fzdd_ (D:)
1e: SCOP_d1fzde_ (E:)
1f: SCOP_d1fzdf_ (F:)
1g: SCOP_d1fzdg_ (G:)
1h: SCOP_d1fzdh_ (H:)
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)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Fibrinogen C-terminal domain-like
(70)
Superfamily
:
Fibrinogen C-terminal domain-like
(70)
Family
:
Fibrinogen C-terminal domain-like
(43)
Protein domain
:
Fibrinogen C-terminal domains
(42)
Human (Homo sapiens), fibrinogen-420, alpha-E [TaxId: 9606]
(1)
1a
d1fzda_
A:
1b
d1fzdb_
B:
1c
d1fzdc_
C:
1d
d1fzdd_
D:
1e
d1fzde_
E:
1f
d1fzdf_
F:
1g
d1fzdg_
G:
1h
d1fzdh_
H:
[
close SCOP info
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1fzdA01 (A:651-750,A:837-847)
1b: CATH_1fzdB01 (B:651-750,B:837-847)
1c: CATH_1fzdC01 (C:651-750,C:837-847)
1d: CATH_1fzdD01 (D:651-750,D:837-847)
1e: CATH_1fzdE01 (E:651-750,E:837-847)
1f: CATH_1fzdF01 (F:651-750,F:837-847)
1g: CATH_1fzdG01 (G:651-750,G:837-847)
1h: CATH_1fzdH01 (H:651-750,H:837-847)
2a: CATH_1fzdA02 (A:751-836)
2b: CATH_1fzdB02 (B:751-836)
2c: CATH_1fzdC02 (C:751-836)
2d: CATH_1fzdD02 (D:751-836)
2e: CATH_1fzdE02 (E:751-836)
2f: CATH_1fzdF02 (F:751-836)
2g: CATH_1fzdG02 (G:751-836)
2h: CATH_1fzdH02 (H:751-836)
View:
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
1fzdA01
A:651-750,A:837-847
1b
1fzdB01
B:651-750,B:837-847
1c
1fzdC01
C:651-750,C:837-847
1d
1fzdD01
D:651-750,D:837-847
1e
1fzdE01
E:651-750,E:837-847
1f
1fzdF01
F:651-750,F:837-847
1g
1fzdG01
G:651-750,G:837-847
1h
1fzdH01
H:651-750,H:837-847
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
1fzdA02
A:751-836
2b
1fzdB02
B:751-836
2c
1fzdC02
C:751-836
2d
1fzdD02
D:751-836
2e
1fzdE02
E:751-836
2f
1fzdF02
F:751-836
2g
1fzdG02
G:751-836
2h
1fzdH02
H:751-836
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Pfam Domains
(0, 0)
Info
all PFAM domains
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