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(-) Description

Title :  TANNIN ACYL HYDROLASE IN COMPLEX WITH 3,4-DIHYDROXYBENZOATE
 
Authors :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, Q. Chen, W. J. Mckinstry
Date :  30 Jan 13  (Deposition) - 22 May 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tannin, Hydrolase, Hydrolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840  |  Reference-DOI: 10.1016/J.JMB.2013.04.032

(-) Compounds

Molecule 1 - TANNASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TANLPL
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1DHB2Ligand/Ion3,4-DIHYDROXYBENZOIC ACID
2PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1DHB1Ligand/Ion3,4-DIHYDROXYBENZOIC ACID
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1DHB1Ligand/Ion3,4-DIHYDROXYBENZOIC ACID
2PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
3PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:76 , GLY A:77 , SER A:163 , ALA A:164 , LYS A:343 , PHE A:348 , GLU A:357 , ASP A:421 , HIS A:451 , HOH A:648BINDING SITE FOR RESIDUE DHB A 501
02AC2SOFTWARETRP A:218 , LYS A:262 , ALA A:287 , GLY A:288 , ARG A:293 , SER A:333 , LEU A:336 , HOH A:914BINDING SITE FOR RESIDUE PEG A 502
03AC3SOFTWAREGLN A:100 , GLY A:458 , HOH A:953 , GLU B:244BINDING SITE FOR RESIDUE PEG A 503
04AC4SOFTWAREGLY B:76 , GLY B:77 , SER B:163 , ALA B:164 , LYS B:343 , PHE B:348 , GLU B:357 , ASP B:421 , HIS B:451 , HOH B:659BINDING SITE FOR RESIDUE DHB B 501
05AC5SOFTWAREALA B:65 , SER B:122 , GLY B:123 , GLN B:124 , ASN B:155 , HOH B:855 , HOH B:979 , HOH B:987BINDING SITE FOR RESIDUE PG4 B 502
06AC6SOFTWARETRP B:218 , LYS B:262 , ALA B:287 , GLY B:288 , ARG B:293 , LEU B:336 , HOH B:799BINDING SITE FOR RESIDUE PEG B 503
07AC7SOFTWAREGLU B:435 , HOH B:880BINDING SITE FOR RESIDUE PEG B 504
08AC8SOFTWAREGLU B:389 , GLN B:392 , SER B:398 , TYR B:399 , SER B:404 , HOH B:836BINDING SITE FOR RESIDUE PEG B 505
09AC9SOFTWAREPRO B:14 , GLU B:15 , GLN B:25 , TYR B:27 , HOH B:921BINDING SITE FOR RESIDUE PEG B 506
10BC1SOFTWAREALA B:40 , ALA B:41 , LYS B:121 , HOH B:768 , HOH B:934 , HOH B:949BINDING SITE FOR RESIDUE PEG B 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0I)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Trp A:91 -Pro A:92
2Ala A:129 -Pro A:130
3Val A:345 -Pro A:346
4Trp B:91 -Pro B:92
5Ala B:129 -Pro B:130
6Val B:345 -Pro B:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0I)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:452
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...ee...ee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0i A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467  
                                                                                                                                                                                                                                                              228|                                                                                                                                                                                                                              
                                                                                                                                                                                                                                                               247                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeee...........eeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh...hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0i B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0I)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4J0I)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3Y018_LACPN | B3Y018: 3wa6 3wa7 4j0c 4j0d 4j0g 4j0h 4j0j 4j0k 4jui

(-) Related Entries Specified in the PDB File

4j0c 4j0d 4j0g 4j0h 4j0j 4j0k 4jui