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(-) Description

Title :  CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED TANNASE FROM LACTOBACILLUS PLANTARUM IN THE ORTHORHOMBIC CRYSTAL
 
Authors :  Y. Matoba, N. Tanaka, M. Sugiyama
Date :  27 Apr 13  (Deposition) - 24 Jul 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta-Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Matoba, N. Tanaka, M. Noda, F. Higashikawa, T. Kumagai, M. Sugiyama
Crystallographic And Mutational Analyses Of Tannase From Lactobacillus Plantarum.
Proteins V. 81 2052 2013
PubMed-ID: 23836494  |  Reference-DOI: 10.1002/PROT.24355

(-) Compounds

Molecule 1 - TANNASE
    Chains: A
    EC Number: 3.1.1.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: SN35N

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMSE A:289 , ARG A:293 , ARG A:297 , LEU A:330 , LEU A:332 , SER A:333 , HOH A:800BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREGLY A:76 , GLY A:77 , SER A:163 , HIS A:451 , GOL A:504 , HOH A:700 , HOH A:723 , HOH A:759BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWAREARG A:64 , ALA A:65 , ARG A:88 , VAL A:89 , THR A:90BINDING SITE FOR RESIDUE ACT A 503
4AC4SOFTWAREGLY A:77 , TYR A:78 , SER A:163 , ILE A:206 , LYS A:343 , GLU A:357 , ASP A:421 , SO4 A:502 , HOH A:765BINDING SITE FOR RESIDUE GOL A 504
5AC5SOFTWARETRP A:11 , ARG A:30 , ASN A:31 , ILE A:32 , HOH A:748 , HOH A:955BINDING SITE FOR RESIDUE GOL A 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WA7)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Trp A:91 -Pro A:92
2Ala A:129 -Pro A:130
3Val A:345 -Pro A:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WA7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WA7)

(-) Exons   (0, 0)

(no "Exon" information available for 3WA7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
 aligned with B3Y018_LACPN | B3Y018 from UniProtKB/TrEMBL  Length:469

    Alignment length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           469 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463     | 
         B3Y018_LACPN     4 RLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.hhh.eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh.........eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhh..hhhhhh.......eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wa7 A   4 RLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILmPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDmKAAIRYVKYNQGRLPGDTNRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADmAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLQLTASDGTHLTLNEAGmGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRmKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAImLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQL 470
                                    13        23        33        43        53        63       |73        83        93       103       113       123       133  |    143       153       163       173       183       193       203       213|      223       233       243       253       263       273       283     | 293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
                                                                                              71-MSE                                                          136-MSE                                                                       214-MSE                                                                    289-MSE                                              342-MSE                                                                                    433-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WA7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WA7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WA7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WA7)

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  Cis Peptide Bonds
    Ala A:129 - Pro A:130   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3Y018_LACPN | B3Y018: 3wa6 4j0c 4j0d 4j0g 4j0h 4j0i 4j0j 4j0k 4jui

(-) Related Entries Specified in the PDB File

3wa6