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(-) Description

Title :  TANNIN ACYL HYDROLASE FROM LACTOBACILLUS PLANTARUM (CADMIUM)
 
Authors :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, Q. Chen, W. J. Mckinstry
Date :  30 Jan 13  (Deposition) - 22 May 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tannin, Hydrolase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840  |  Reference-DOI: 10.1016/J.JMB.2013.04.032

(-) Compounds

Molecule 1 - TANNASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TANLPL
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1CD4Ligand/IonCADMIUM ION
2PEG11Ligand/IonDI(HYDROXYETHYL)ETHER
3PG42Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2PEG8Ligand/IonDI(HYDROXYETHYL)ETHER
3PG42Ligand/IonTETRAETHYLENE GLYCOL
4PGE-1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:273 , HIS A:281 , HOH A:940 , HOH B:969 , HOH B:970BINDING SITE FOR RESIDUE CD A 501
02AC2SOFTWARECYS A:204 , ASP A:419 , ASP A:421 , HIS A:451BINDING SITE FOR RESIDUE CD A 502
03AC3SOFTWAREARG A:412 , ARG A:414 , ASP A:442 , ASP A:456 , ASP A:459 , HOH A:743BINDING SITE FOR RESIDUE PEG A 503
04AC4SOFTWARETRP A:218 , GLN A:219 , LYS A:262 , ALA A:287 , GLY A:288 , ARG A:293 , LEU A:332 , SER A:333 , LEU A:336BINDING SITE FOR RESIDUE PGE A 504
05AC5SOFTWARESER A:58 , ASN A:60 , GLY A:61 , GLN A:63 , TYR B:229 , LEU B:339 , ARG B:420 , HOH B:734BINDING SITE FOR RESIDUE PEG A 505
06AC6SOFTWAREGLN A:100 , GLY A:458 , GLU B:244BINDING SITE FOR RESIDUE PEG A 506
07AC7SOFTWAREHIS B:281 , HOH B:972 , HOH B:984BINDING SITE FOR RESIDUE CD B 501
08AC8SOFTWARECYS B:204 , HIS B:415 , ASP B:419 , ASP B:421 , HIS B:451BINDING SITE FOR RESIDUE CD B 502
09AC9SOFTWARETRP B:218 , GLN B:219 , ASN B:221 , LYS B:262 , ALA B:287 , GLY B:288 , MET B:289 , ARG B:293 , LEU B:332 , SER B:333 , LEU B:336 , LYS B:337 , HOH B:746BINDING SITE FOR RESIDUE PG4 B 503
10BC1SOFTWAREALA B:65 , THR B:66 , GLY B:123 , GLN B:124 , ASN B:155 , HOH B:608 , HOH B:801 , HOH B:824 , HOH B:974BINDING SITE FOR RESIDUE PG4 B 504
11BC2SOFTWARETRP B:11 , ALA B:28 , ALA B:29 , ARG B:30 , GLY B:324 , HOH B:847BINDING SITE FOR RESIDUE PEG B 505
12BC3SOFTWARESER B:0 , ASN B:3 , PRO B:38 , ASP B:329 , LEU B:330 , HOH B:691BINDING SITE FOR RESIDUE PEG B 506
13BC4SOFTWAREPRO B:14 , GLU B:15 , GLN B:25BINDING SITE FOR RESIDUE PEG B 507
14BC5SOFTWARELYS B:409 , GLY B:438 , TYR B:439 , HOH B:823 , HOH B:883BINDING SITE FOR RESIDUE PEG B 508
15BC6SOFTWAREARG B:64 , GLY B:148 , ARG B:149 , LEU B:150BINDING SITE FOR RESIDUE PEG B 509
16BC7SOFTWAREVAL B:17 , VAL B:19 , GLN B:99BINDING SITE FOR RESIDUE PEG B 510
17BC8SOFTWAREARG B:412 , ARG B:414 , PRO B:446 , ASP B:456 , ASP B:459 , HOH B:671 , HOH B:903BINDING SITE FOR RESIDUE PEG B 511
18BC9SOFTWARESER B:291 , ASP B:294 , VAL B:295 , HOH B:952BINDING SITE FOR RESIDUE PEG B 512

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0D)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Val A:19 -Ala A:20
2Trp A:91 -Pro A:92
3Ala A:129 -Pro A:130
4Val A:345 -Pro A:346
5Trp B:91 -Pro B:92
6Ala B:129 -Pro B:130
7Val B:345 -Pro B:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0D)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeee....eeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeee...........eeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0d A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469


Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0d B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0D)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4J0D)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3Y018_LACPN | B3Y018: 3wa6 3wa7 4j0c 4j0g 4j0h 4j0i 4j0j 4j0k 4jui

(-) Related Entries Specified in the PDB File

4j0c 4j0g 4j0h 4j0i 4j0j 4j0k 4jui