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(-) Description

Title :  TANNIN ACYL HYDROLASE IN COMPLEX WITH GALLIC ACID
 
Authors :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, Q. Chen, W. J. Mckinstry
Date :  30 Jan 13  (Deposition) - 22 May 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tannin, Hydrolase, Hydrolysis, Gallic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840  |  Reference-DOI: 10.1016/J.JMB.2013.04.032

(-) Compounds

Molecule 1 - TANNASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TANLPL
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1GDE2Ligand/Ion3,4,5-TRIHYDROXYBENZOIC ACID
2PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
3PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1GDE1Ligand/Ion3,4,5-TRIHYDROXYBENZOIC ACID
2PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1GDE1Ligand/Ion3,4,5-TRIHYDROXYBENZOIC ACID
2PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
3PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:76 , GLY A:77 , TYR A:78 , SER A:163 , ALA A:164 , ILE A:206 , LYS A:343 , GLU A:357 , ASP A:421 , HIS A:451 , HOH A:650 , HOH A:717 , HOH A:912BINDING SITE FOR RESIDUE GDE A 501
02AC2SOFTWARETYR A:180 , HOH A:621 , HOH A:771 , HOH A:1142 , TYR B:180 , HOH B:910BINDING SITE FOR RESIDUE PG4 A 502
03AC3SOFTWARETRP A:218 , LYS A:262 , ALA A:287 , GLY A:288 , MET A:289 , ARG A:293 , SER A:333 , LEU A:336 , HOH A:1034BINDING SITE FOR RESIDUE PEG A 503
04AC4SOFTWAREGLU A:435BINDING SITE FOR RESIDUE PEG A 504
05AC5SOFTWARESER A:0 , MET A:1 , HIS A:37 , ARG A:293 , ASP A:294 , ARG A:297 , HOH A:704 , HOH A:956BINDING SITE FOR RESIDUE PEG A 505
06AC6SOFTWAREGLY B:76 , GLY B:77 , TYR B:78 , SER B:163 , ALA B:164 , ILE B:206 , LYS B:343 , GLU B:357 , ASP B:421 , HIS B:451 , HOH B:868 , HOH B:1137 , HOH B:1243BINDING SITE FOR RESIDUE GDE B 501
07AC7SOFTWARESER A:379 , VAL A:381 , THR A:382 , ALA A:383 , HOH A:731 , LYS B:144 , ASN B:155 , HOH B:934BINDING SITE FOR RESIDUE PG4 B 502
08AC8SOFTWARETRP B:218 , LYS B:262 , ALA B:287 , GLY B:288 , MET B:289 , ARG B:293 , LEU B:332 , SER B:333 , LEU B:336 , HOH B:1162BINDING SITE FOR RESIDUE PEG B 503
09AC9SOFTWAREVAL B:295 , ALA B:431 , HOH B:1186BINDING SITE FOR RESIDUE PEG B 504
10BC1SOFTWAREASP B:10 , GLY B:324 , ASN B:325 , HOH B:1109BINDING SITE FOR RESIDUE PEG B 505
11BC2SOFTWARELEU A:250 , GLN A:255 , HOH A:1121BINDING SITE FOR RESIDUE PEG B 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0H)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Trp A:91 -Pro A:92
2Ala A:129 -Pro A:130
3Val A:345 -Pro A:346
4Trp B:91 -Pro B:92
5Ala B:129 -Pro B:130
6Val B:345 -Pro B:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0H)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhh..hhhhhh.......eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0h A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469


Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh...hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhh.hhhhhh........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0h B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0H)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4J0H)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3Y018_LACPN | B3Y018: 3wa6 3wa7 4j0c 4j0d 4j0g 4j0i 4j0j 4j0k 4jui

(-) Related Entries Specified in the PDB File

4j0c 4j0d 4j0g 4j0i 4j0j 4j0k 4jui