4J0K - JenaLib

Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   TANNIN ACYL HYDROLASE IN COMPLEX WITH ETHYL GALLATE

Authors :   B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, Q. Chen, W. J. Mckinstry

Date :   31 Jan 13 (Deposition) - 22 May 13 (Release) - 22 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Tannin, Hydrolase, Hydrolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840 | Reference-DOI: 10.1016/J.JMB.2013.04.032

Molecule 1 - TANNASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TANLPL
	Organism Scientific	:	LACTOBACILLUS PLANTARUM
	Organism Taxid	:	1590

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 6)

No.	Name	Count	Type	Full Name
1	EGR	2	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	EGR	1	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	EGR	1	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:76 , GLY A:77 , TYR A:78 , SER A:163 , ALA A:164 , ILE A:206 , LYS A:343 , GLU A:357 , ASP A:421 , HIS A:451	BINDING SITE FOR RESIDUE EGR A 501
2	AC2	SOFTWARE	TRP A:218 , GLN A:219 , LYS A:262 , ALA A:287 , GLY A:288 , ARG A:293 , SER A:333 , LEU A:336 , HOH A:836	BINDING SITE FOR RESIDUE PGE A 502
3	AC3	SOFTWARE	GLY B:76 , GLY B:77 , TYR B:78 , SER B:163 , ALA B:164 , LYS B:343 , GLU B:357 , ASP B:421 , HIS B:451 , HOH B:802	BINDING SITE FOR RESIDUE EGR B 501
4	AC4	SOFTWARE	ALA B:65 , VAL B:119 , SER B:122 , GLY B:123 , GLN B:124 , ARG B:125 , ASP B:153 , ASN B:155 , ARG B:156 , HOH B:798 , HOH B:832	BINDING SITE FOR RESIDUE PG4 B 502
5	AC5	SOFTWARE	LEU B:353 , ALA B:368 , LYS B:409 , HIS B:410 , PEG B:504 , HOH B:713	BINDING SITE FOR RESIDUE PEG B 503
6	AC6	SOFTWARE	ASP B:352 , THR B:354 , VAL B:381 , LYS B:409 , HIS B:410 , PEG B:503	BINDING SITE FOR RESIDUE PEG B 504

(no "SS Bond" information available for 4J0K)

Asymmetric Unit

No.	Residues
1	Trp A:91	-	Pro A:92
2	Ala A:129	-	Pro A:130
3	Val A:345	-	Pro A:346
4	Trp B:91	-	Pro B:92
5	Ala B:129	-	Pro B:130
6	Val B:345	-	Pro B:346

(no "SAP(SNP)/Variant" information available for 4J0K)

(no "PROSITE Motif" information available for 4J0K)

(no "Exon" information available for 4J0K)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeee...eeee.hhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhh...hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.......eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0k A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       405       415       425       435       445       455       465    
                                                                                                                                                                                                                                                              228|                                                                                                                                                           401|                                                                 
                                                                                                                                                                                                                                                               243                                                                                                                                                            404

Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh...hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhh.hhhhhh........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0k B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4J0K)

(no "CATH Domain" information available for 4J0K)

(no "Pfam Domain" information available for 4J0K)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4J0K)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		EGR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Ala A:129 - Pro A:130	[ RasMol ]
		Ala B:129 - Pro B:130	[ RasMol ]
		Trp A:91 - Pro A:92	[ RasMol ]
		Trp B:91 - Pro B:92	[ RasMol ]
		Val A:345 - Pro A:346	[ RasMol ]
		Val B:345 - Pro B:346	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

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	B3Y018_LACPN \| B3Y018	:	3wa6 3wa7 4j0c 4j0d 4j0g 4j0h 4j0i 4j0j 4jui

Description

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Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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