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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TANNASE FROM FROM LACTOBACILLUS PLANTARUM

Authors :   B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen

Date :   24 Mar 13 (Deposition) - 22 May 13 (Release) - 22 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Gallate, Hydrolase, Hydrolysis, Tannins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840 | Reference-DOI: 10.1016/J.JMB.2013.04.032

Molecule 1 - TANNASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TANLPL
	Mutation	:	YES
	Organism Scientific	:	LACTOBACILLUS PLANTARUM
	Organism Taxid	:	1590

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	EGR	2	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	8	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (4, 7)

No.	Name	Count	Type	Full Name
1	EGR	1	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	EGR	1	Ligand/Ion	ETHYL 3,4,5-TRIHYDROXYBENZOATE
2	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:76 , GLY A:77 , TYR A:78 , ALA A:163 , ALA A:164 , LYS A:343 , GLU A:357 , ASP A:421 , HIS A:451 , HOH A:711 , HOH A:781 , HOH A:1035 , HOH A:1057	BINDING SITE FOR RESIDUE EGR A 501
02	AC2	SOFTWARE	SER A:379 , VAL A:381 , THR A:382 , ALA A:383 , GLN B:124 , LYS B:144 , GLN B:147 , ASN B:155 , HOH B:754 , HOH B:1006	BINDING SITE FOR RESIDUE PG4 A 502
03	AC3	SOFTWARE	ASN A:224 , LEU A:250 , GLN A:255	BINDING SITE FOR RESIDUE PEG A 503
04	AC4	SOFTWARE	TRP A:218 , LYS A:262 , ALA A:287 , GLY A:288 , MET A:289 , ARG A:293 , LEU A:332 , SER A:333 , LEU A:336 , HOH A:1014	BINDING SITE FOR RESIDUE PGE A 504
05	AC5	SOFTWARE	HOH A:998	BINDING SITE FOR RESIDUE PEG A 505
06	AC6	SOFTWARE	TYR A:180 , HOH A:621 , HOH A:784 , PEG B:506 , HOH B:899	BINDING SITE FOR RESIDUE PEG A 506
07	AC7	SOFTWARE	ARG A:293 , ARG A:297 , SER A:333 , HOH A:825	BINDING SITE FOR RESIDUE PEG A 507
08	AC8	SOFTWARE	GLY B:76 , GLY B:77 , TYR B:78 , ALA B:163 , ALA B:164 , ILE B:206 , LYS B:343 , PHE B:348 , GLU B:357 , ASP B:421 , HIS B:451 , HOH B:874	BINDING SITE FOR RESIDUE EGR B 501
09	AC9	SOFTWARE	TRP B:218 , LYS B:262 , ALA B:287 , GLY B:288 , ARG B:293 , SER B:333 , LEU B:336	BINDING SITE FOR RESIDUE PGE B 502
10	BC1	SOFTWARE	GLY B:324 , ASN B:325	BINDING SITE FOR RESIDUE PEG B 503
11	BC2	SOFTWARE	ILE B:432 , GLU B:435 , HOH B:863 , HOH B:1040 , HOH B:1132	BINDING SITE FOR RESIDUE PEG B 504
12	BC3	SOFTWARE	THR A:380 , VAL A:381 , ARG B:141 , GLU B:182 , PRO B:192 , ALA B:193 , HOH B:973	BINDING SITE FOR RESIDUE PEG B 505
13	BC4	SOFTWARE	PEG A:506 , HOH A:621 , TYR B:180 , HOH B:979	BINDING SITE FOR RESIDUE PEG B 506

(no "SS Bond" information available for 4JUI)

Asymmetric Unit

No.	Residues
1	Trp A:91	-	Pro A:92
2	Ala A:129	-	Pro A:130
3	Val A:345	-	Pro A:346
4	Trp B:91	-	Pro B:92
5	Ala B:129	-	Pro B:130
6	Val B:345	-	Pro B:346

(no "SAP(SNP)/Variant" information available for 4JUI)

(no "PROSITE Motif" information available for 4JUI)

(no "Exon" information available for 4JUI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhhhhhh..........eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeee...........eeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jui A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTAAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469

Chain B from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh...hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jui B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTAAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4JUI)

(no "CATH Domain" information available for 4JUI)

(no "Pfam Domain" information available for 4JUI)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4JUI)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		EGR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PG4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:129 - Pro A:130	[ RasMol ]
		Ala B:129 - Pro B:130	[ RasMol ]
		Trp A:91 - Pro A:92	[ RasMol ]
		Trp B:91 - Pro B:92	[ RasMol ]
		Val A:345 - Pro A:346	[ RasMol ]
		Val B:345 - Pro B:346	[ RasMol ]

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	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	B3Y018_LACPN \| B3Y018	:	3wa6 3wa7 4j0c 4j0d 4j0g 4j0h 4j0i 4j0j 4j0k

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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