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(-) Description

Title :  TANNIN ACYL HYDROLASE (MERCURY DERIVATIVE)
 
Authors :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, Q. Chen, W. J. Mckinstry
Date :  30 Jan 13  (Deposition) - 22 May 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tannin, Hydrolase, Hydrolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Ren, M. Wu, Q. Wang, X. Peng, H. Wen, W. J. Mckinstry, Q. Chen
Crystal Structure Of Tannase From Lactobacillus Plantarum
J. Mol. Biol. 2013
PubMed-ID: 23648840  |  Reference-DOI: 10.1016/J.JMB.2013.04.032

(-) Compounds

Molecule 1 - TANNASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TANLPL
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2HG4Ligand/IonMERCURY (II) ION
3PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2HG-1Ligand/IonMERCURY (II) ION
3PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2HG-1Ligand/IonMERCURY (II) ION
3PEG4Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:66 , CYS A:468 , HOH A:737BINDING SITE FOR RESIDUE HG A 501
02AC2SOFTWARECYS A:204 , ASP A:419 , ASP A:421 , HIS A:451 , SER A:452 , HOH A:739 , HOH A:740BINDING SITE FOR RESIDUE HG A 502
03AC3SOFTWAREPRO A:86 , GLN A:87 , GLN A:99BINDING SITE FOR RESIDUE PEG A 503
04AC4SOFTWAREILE A:441BINDING SITE FOR RESIDUE PEG A 504
05AC5SOFTWARETRP A:218 , LYS A:262 , ALA A:287 , GLY A:288 , ARG A:293 , SER A:333 , LEU A:336BINDING SITE FOR RESIDUE PEG A 505
06AC6SOFTWARETYR B:62 , THR B:66 , CYS B:468 , HOH B:735BINDING SITE FOR RESIDUE HG B 501
07AC7SOFTWARECYS B:204 , ASP B:419 , ASP B:421 , HOH B:743BINDING SITE FOR RESIDUE HG B 502
08AC8SOFTWARETHR A:382 , GLN A:384 , ALA B:65 , THR B:66 , SER B:122 , GLY B:123 , GLN B:124 , ARG B:125 , GLN B:147 , ASP B:153 , ASN B:155 , ARG B:156 , PEG B:504 , HOH B:624 , HOH B:651BINDING SITE FOR RESIDUE 1PE B 503
09AC9SOFTWAREARG B:125 , ARG B:156 , LYS B:367 , LYS B:409 , 1PE B:503BINDING SITE FOR RESIDUE PEG B 504
10BC1SOFTWARETRP B:218 , LYS B:262 , GLY B:288 , ARG B:293 , SER B:333 , LEU B:336BINDING SITE FOR RESIDUE PEG B 505
11BC2SOFTWAREASN B:60 , GLY B:61 , TYR B:62 , GLN B:469BINDING SITE FOR RESIDUE PEG B 506
12BC3SOFTWAREGLU B:435BINDING SITE FOR RESIDUE PEG B 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0G)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Trp A:91 -Pro A:92
2Ala A:129 -Pro A:130
3Val A:345 -Pro A:346
4Trp B:91 -Pro B:92
5Ala B:129 -Pro B:130
6Val B:345 -Pro B:346
7Tyr B:455 -Asp B:456

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0G)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeee............eeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eee...eee.hhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhh..hhhhh..eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0g A   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229|      255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465    
                                                                                                                                                                                                                                                               229|                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                246                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhheeeeeee..eeeeeeeeeeee..........eeeeeee.hhhh.............eeee.....................hhhhhhhhhhhh.eeeee..................hhhhhhhhhhhhhhhhh......hhh.eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhh...eeeeeeee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh..........eeee..eeeeehhhhhhhhhh..............hhhhhhh..........hhhhhhh........hhhhhhhhhhhhhh.........eeeee.........hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0g B   0 SMSNRLIFDADWLVPEQVQVAGQAIQYYAARNIQYVQHPVAAIQVLNVFVPAAYLHGSSVNGYQRATAPILMPNTVGGYLPGPADDPQRVTWPTNAGTIQQALKRGYVVVAAGIRGRTTVDKSGQRVGQAPAFIVDMKAAIRYVKYNQGRLPGDANRIITNGTSAGGATSALAGASGNSAYFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQGTDIHKYAGFVVTGNQVTDLDLSAYLKSLTRMKAVPAFDQLDLTSPENNLFGDATAKAKHFTALAQTRSTVTAQLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLENHGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ 469
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229    || 245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465    
                                                                                                                                                                                                                                                                    234|                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                     241
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0G)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4J0G)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3Y018_LACPN | B3Y018: 3wa6 3wa7 4j0c 4j0d 4j0h 4j0i 4j0j 4j0k 4jui

(-) Related Entries Specified in the PDB File

4j0c 4j0d 4j0h 4j0i 4j0j 4j0k 4jui