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Title :   STRUCTURES OF A BETA-LACTAM BRIDGED ANALOGUE IN COMPLEX WITH TUBULIN

Authors :   L. Zhou, Y. Liu, L. Cheng, Y. Wang

Date :   28 Jul 16 (Deposition) - 22 Mar 17 (Release) - 22 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.48

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Beta-Lactam Bridged Analogue Tubulin Colchicine Binding Site, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Zhou, Y. Liu, L. Zhou, K. Zhu, K. Feng, H. Zhang, Y. Liang, H. Jiang, C. Luo, M. Liu, Y. Wang
Potent Antitumor Activities And Structure Basis Of The Chiral Beta-Lactam Bridged Analogue Of Combretastatin A-4 Binding To Tubulin.
J. Med. Chem. V. 59 10329 2016
PubMed-ID: 27805821 | Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01268

Molecule 1 - TUBULIN ALPHA-1B CHAIN
	Chains	:	A, C
	Fragment	:	UNP RESIDUES 1-440
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	TUBULIN ALPHA, ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1, TUBULIN ALPHA-UBIQUITOUS CHAIN

Molecule 2 - TUBULIN BETA-2B CHAIN
	Chains	:	B, D
	Fragment	:	UNP RESIDUES 1-431
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	TUBULIN BETA

Molecule 3 - STATHMIN-4
	Chains	:	E
	Fragment	:	UNP RESIDUES 50-185
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	STATHMIN-LIKE PROTEIN B3,RB3

Molecule 4 - UNCHARACTERIZED PROTEIN
	Chains	:	F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
	Expression System Taxid	:	1182032
	Gene	:	TTL
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (8, 29)

No.	Name	Count	Type	Full Name
1	6ZR	1	Ligand/Ion	(3R,4R)-4-(4-METHOXY-3-OXIDANYL-PHENYL)-3-METHYL-1-(3,4,5-TRIMETHOXYPHENYL)AZETIDIN-2-ONE
2	CA	3	Ligand/Ion	CALCIUM ION
3	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
4	GOL	12	Ligand/Ion	GLYCEROL
5	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	IMD	3	Ligand/Ion	IMIDAZOLE
7	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8	MG	5	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:611 , HOH A:612 , HOH A:635	binding site for residue GTP A 501
02	AC2	SOFTWARE	GTP A:501 , HOH A:611 , HOH A:635	binding site for residue MG A 502
03	AC3	SOFTWARE	ASN A:216 , PRO A:274 , VAL A:275 , ALA A:294 , ASN A:300	binding site for residue GOL A 503
04	AC4	SOFTWARE	HIS A:309 , GLY A:310 , THR A:382 , ALA A:383 , ALA A:385 , GLU A:386 , ARG F:66	binding site for residue GOL A 504
05	AC5	SOFTWARE	ASP A:39 , THR A:41 , GLY A:44 , GLU A:55	binding site for residue CA A 505
06	AC6	SOFTWARE	LYS A:164 , LYS A:166 , GLU A:196 , ASP E:44	binding site for residue GOL A 506
07	AC7	SOFTWARE	GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:603 , HOH B:604 , HOH B:613 , HOH B:625 , HOH B:631	binding site for residue GDP B 501
08	AC8	SOFTWARE	GLN B:11 , ASP B:179 , GDP B:501 , HOH B:648	binding site for residue MG B 502
09	AC9	SOFTWARE	ARG B:401 , TYR C:262 , GLU C:434 , VAL C:435	binding site for residue GOL B 503
10	AD1	SOFTWARE	VAL B:177 , PRO B:222	binding site for residue GOL B 504
11	AD2	SOFTWARE	GLU B:27 , ALA B:233 , SER B:236 , GLY B:237 , PHE B:272 , ARG B:320 , PRO B:360 , SER B:374 , ALA B:375 , THR B:376	binding site for residue GOL B 505
12	AD3	SOFTWARE	GLU B:113	binding site for residue CA B 506
13	AD4	SOFTWARE	ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ILE B:165 , ASN B:197 , ASP B:199 , ARG B:253	binding site for residue MES B 507
14	AD5	SOFTWARE	THR A:179 , ALA A:180 , VAL A:181 , GLY B:237 , VAL B:238 , CYS B:241 , ALA B:250 , ASP B:251 , LYS B:254 , LEU B:255 , ASN B:258 , ALA B:317 , ILE B:318 , LYS B:352	binding site for residue 6ZR B 508
15	AD6	SOFTWARE	LYS B:105 , THR C:253 , THR C:257	binding site for residue GOL C 502
16	AD7	SOFTWARE	GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , MG C:504 , HOH C:621 , HOH C:628 , LYS D:254	binding site for residue GTP C 503
17	AD8	SOFTWARE	GTP C:503 , HOH C:628	binding site for residue MG C 504
18	AD9	SOFTWARE	VAL C:177 , ARG C:221 , PRO C:222 , THR C:223 , TYR C:224 , GLN D:247	binding site for residue GOL C 505
19	AE1	SOFTWARE	SER C:287 , VAL C:288 , ASP C:322 , ASP C:327 , ARG C:373 , HOH C:601	binding site for residue GOL C 506
20	AE2	SOFTWARE	LYS C:163 , LYS C:164 , LYS C:166 , GLU C:196 , HIS C:197 , ASP C:199	binding site for residue GOL C 507
21	AE3	SOFTWARE	ASP C:431 , HOH C:626 , HOH C:672	binding site for residue IMD C 508
22	AE4	SOFTWARE	GLY C:410 , GLU C:411 , GOL D:504 , ARG E:112 , LEU E:116	binding site for residue IMD C 509
23	AE5	SOFTWARE	SER C:165 , LEU C:167 , GLN C:256	binding site for residue IMD C 510
24	AE6	SOFTWARE	GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:142 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:603	binding site for residue GDP D 501
25	AE7	SOFTWARE	GLN D:11 , ASP D:179 , GDP D:501	binding site for residue MG D 502
26	AE8	SOFTWARE	VAL D:177 , PRO D:222 , TYR D:224	binding site for residue GOL D 503
27	AE9	SOFTWARE	IMD C:509 , ARG D:158 , PRO D:162 , ASP D:163 , ARG D:164 , ASP D:199 , ARG D:253	binding site for residue GOL D 504
28	AF1	SOFTWARE	GLU F:331	binding site for residue MG F 401

(no "SS Bond" information available for 5GON)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:273	-	Pro A:274
2	Ala B:273	-	Pro B:274
3	Ala C:273	-	Pro C:274
4	Ala D:273	-	Pro D:274
5	Thr F:125	-	Asp F:126
6	Glu F:193	-	Pro F:194

(no "SAP(SNP)/Variant" information available for 5GON)

(no "PROSITE Motif" information available for 5GON)

(no "Exon" information available for 5GON)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhh.......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee.............hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhh.........eeeeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430

Chain B from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhh.................hhhh.eee.....eee.eeeee..hhhhhhhhh..hhhhhhhh.eee.......hhhhhhh..hhhhhhhhhhhhhhhhh....eeeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhhhhh.......eeeeee.........eeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon B   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272  ||   288       298       308       318       328       338       348       358 ||    376       386       396       406       416       426       436  
                                                                    42|                                                                                                                                                                                                                                   275|                                                                           360|                                                                     
                                                                     45                                                                                                                                                                                                                                    282                                                                            369

Chain C from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhhh......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee...hhhhhh....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhh............eeeee................eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon C   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440

Chain D from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhhh..........hhhhh.hhhh.eee.....eee.eeeee..hhhhhhhhhh......hhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee...hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.......eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon D   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLLTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 441
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272  ||   292       302       312       322       332       342       352       370       380       390       400       410       420       430       440 
                                                                    42|                                                                                                                                                                                                                                   275|                                                                       360|                                                                        
                                                                     45                                                                                                                                                                                                                                    286                                                                        369

Chain E from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon E   6 MEVIELNKCTSGQSFEVILKPPSDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 141
                                    15        25  ||    50        60        70        80        90       100       110       120       130       140 
                                                 28|                                                                                                 
                                                  44

Chain F from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......hhhhhhhhhhhhh...eee.........ee.......hhhhh........ee.....hhhhhhhhhhhhhhhhh............eee.....hhhhhhhh......eee.....hhhhhh...eee...............eeeeeeeee.....eeee...eeee.............................hhh.eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeeeeee.....eeeeeee..........hhhhhhhhhhhh.........eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gon F   1 MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTDEREVFLAAYNGNVWIAKSISSEASELLDFIHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSADKTCHLTNHCIQKEYSNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLASIFIKL 378
                                    10        20        30        40        50        60        70        80        90       100 ||    132   ||  149 ||    169   ||  185       195       205       215       225     ||238       248 ||    259       269       279       289       299       309       319       329       339       349       359  ||     
                                                                                                                               102|        136|    151|        173|                                                231|            250|                                                                                                           362|     
                                                                                                                                125         144     162         180                                                 235             252                                                                                                            373

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5GON)

(no "CATH Domain" information available for 5GON)

(no "Pfam Domain" information available for 5GON)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		6ZR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Ala A:273 - Pro A:274	[ RasMol ]
		Ala B:273 - Pro B:274	[ RasMol ]
		Ala C:273 - Pro C:274	[ RasMol ]
		Ala D:273 - Pro D:274	[ RasMol ]
		Glu F:193 - Pro F:194	[ RasMol ]
		Thr F:125 - Asp F:126	[ RasMol ]

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Access by PDB/NDB ID
	5gon
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
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Access by UniProt ID/Accession number
	E1BQ43_CHICK \| E1BQ43
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	STMN4_RAT \| P63043
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		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	TBA1B_BOVIN \| P81947
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	TBB2B_BOVIN \| Q6B856
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	E1BQ43_CHICK \| E1BQ43
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	STMN4_RAT \| P63043
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	TBA1B_BOVIN \| P81947
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	TBB2B_BOVIN \| Q6B856
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

4o2b	THE SAME PROTEINS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 29)

Sites (28, 28)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (31, 42)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File