5HNY - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURAL BASIS OF BACKWARDS MOTION IN KINESIN-14: PLUS-END DIRECTED NKN669 IN THE AMPPNP STATE

Authors :   H. Shigematsu, T. Yokoyama, M. Kikkawa, M. Shirouzu, R. Nitta

Date :   19 Jan 16 (Deposition) - 10 Aug 16 (Release) - 07 Sep 16 (Revision)

Method :   ELECTRON MICROSCOPY

Resolution :   6.30

Chains :   Asym./Biol. Unit : A,B,K

Keywords :   Kinesin, Kinesin-14, Microtubule, Atpase, Structural Protein-Motor Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Yamagishi, H. Shigematsu, T. Yokoyama, M. Kikkawa, M. Sugawa, M. Aoki, M. Shirouzu, J. Yajima, R. Nitta
Structural Basis Of Backwards Motion In Kinesin-1-Kinesin-1 Chimera: Implication For Kinesin-14 Motility
Structure V. 24 1322 2016
PubMed-ID: 27452403 | Reference-DOI: 10.1016/J.STR.2016.05.021

Molecule 1 - TUBULIN ALPHA-1B CHAIN
	Chains	:	A
	Fragment	:	UNP RESIDUES 2-439
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA- UBIQUITOUS CHAIN

Molecule 2 - TUBULIN BETA-2B CHAIN
	Chains	:	B
	Fragment	:	UNP RESIDUES 2-427
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	BETA-TUBULIN

Molecule 3 - PROTEIN CLARET SEGREGATIONAL, KINESIN-1/KINESIN-14, PROTEIN CLARET SEGREGATIONAL
	Chains	:	K
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 325-348, UNP RESIDUES 664-700
	Gene	:	NCD
	Organism Common	:	FRUIT FLY, RAT
	Organism Scientific	:	DROSOPHILA MELANOGASTER, RATTUS NORVEGICUS
	Organism Taxid	:	7227, 10116

		1	2	3
Asymmetric/Biological Unit	:	A	B	K

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 6)

No.	Name	Count	Type	Full Name
1	ANP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
4	MG	2	Ligand/Ion	MAGNESIUM ION
5	TA1	1	Ligand/Ion	TAXOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ILE A:171 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:501 , LEU B:248 , LYS B:254	binding site for residue GTP A 500
2	AC2	SOFTWARE	GLN A:11 , ASP A:69 , GLU A:71 , GTP A:500	binding site for residue MG A 501
3	AC3	SOFTWARE	GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:142 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228	binding site for residue GDP B 600
4	AC4	SOFTWARE	VAL B:23 , GLU B:27 , HIS B:229 , LEU B:230 , ALA B:233 , SER B:236 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , SER B:277 , ARG B:278 , PRO B:360 , ARG B:369 , GLY B:370	binding site for residue TA1 B 601
5	AC5	SOFTWARE	THR K:108 , HIS K:216 , ANP K:402	binding site for residue MG K 401
6	AC6	SOFTWARE	ARG K:30 , GLN K:102 , THR K:103 , SER K:104 , SER K:105 , GLY K:106 , LYS K:107 , THR K:108 , HIS K:109 , ASN K:214 , HIS K:216 , MG K:401	binding site for residue ANP K 402

(no "SS Bond" information available for 5HNY)

(no "Cis Peptide Bond" information available for 5HNY)

(no "SAP(SNP)/Variant" information available for 5HNY)

(no "PROSITE Motif" information available for 5HNY)

(no "Exon" information available for 5HNY)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:408
                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhh...........eeeee.hhhhhhhhhhh..........eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhhhh.....eeee............hhhhhhhhhhhhh....eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh........eee...............hhhhhhhhhhh..............eeeeeeeeee..hhhhhhhhhhhhhh.............eeeee.................eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hny A   2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 435
                                    11        21        31  ||    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427        
                                                           34|                                                                                                                                                                                                                                                                                                                                                                                      
                                                            61

Chain B from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhhhhhhhhh..................hhhhhh...........eeeee.hhhhhhhhh..hhhhh.hhh.eee...............hhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhh....eee..hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh......eeeee................hhhhhhhhh.........hhhhh.eeeeeeeee...hhhhhhhhhhhhhhhh...........eeeeee..........eeeeeee..hhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hny B   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 435
                                    11        21        31        41  ||    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353      |371       381       391       401       411       421       431    
                                                                     44|                                                                                                                                                                                                                                                                                                                      360|                                                                  
                                                                      47                                                                                                                                                                                                                                                                                                                       369

Chain K from PDB  Type:PROTEIN  Length:317
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhh.......eee...eee.........eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh..........hhhhhhhhhhhhh......eeeeeeeeeeeee..eeee..........eee.....eee....eeee.hhhhhhhhhhhhhh...ee.......ee..eeeeeeeeeeee.....eeeeeeeeee................hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh.........eeeeee...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hny K  24 NIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFAIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKS 340
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5HNY)

(no "CATH Domain" information available for 5HNY)

(no "Pfam Domain" information available for 5HNY)

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5hny)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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