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5GON
Asym. Unit
Info
Asym.Unit (375 KB)
Biol.Unit 1 (365 KB)
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(1)
Title
:
STRUCTURES OF A BETA-LACTAM BRIDGED ANALOGUE IN COMPLEX WITH TUBULIN
Authors
:
L. Zhou, Y. Liu, L. Cheng, Y. Wang
Date
:
28 Jul 16 (Deposition) - 22 Mar 17 (Release) - 22 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.48
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Beta-Lactam Bridged Analogue Tubulin Colchicine Binding Site, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Zhou, Y. Liu, L. Zhou, K. Zhu, K. Feng, H. Zhang, Y. Liang, H. Jiang, C. Luo, M. Liu, Y. Wang
Potent Antitumor Activities And Structure Basis Of The Chiral Beta-Lactam Bridged Analogue Of Combretastatin A-4 Binding To Tubulin.
J. Med. Chem. V. 59 10329 2016
[
close entry info
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Hetero Components
(8, 29)
Info
All Hetero Components
1a: (3R,4R)-4-(4-METHOXY-3-OXIDANYL-PH... (6ZRa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
6a: IMIDAZOLE (IMDa)
6b: IMIDAZOLE (IMDb)
6c: IMIDAZOLE (IMDc)
7a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
8a: MAGNESIUM ION (MGa)
8b: MAGNESIUM ION (MGb)
8c: MAGNESIUM ION (MGc)
8d: MAGNESIUM ION (MGd)
8e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6ZR
1
Ligand/Ion
(3R,4R)-4-(4-METHOXY-3-OXIDANYL-PHENYL)-3-METHYL-1-(3,4,5-TRIMETHOXYPHENYL)AZETIDIN-2-ONE
2
CA
3
Ligand/Ion
CALCIUM ION
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
12
Ligand/Ion
GLYCEROL
5
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
6
IMD
3
Ligand/Ion
IMIDAZOLE
7
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8
MG
5
Ligand/Ion
MAGNESIUM ION
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:611 , HOH A:612 , HOH A:635
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:611 , HOH A:635
binding site for residue MG A 502
03
AC3
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ALA A:294 , ASN A:300
binding site for residue GOL A 503
04
AC4
SOFTWARE
HIS A:309 , GLY A:310 , THR A:382 , ALA A:383 , ALA A:385 , GLU A:386 , ARG F:66
binding site for residue GOL A 504
05
AC5
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55
binding site for residue CA A 505
06
AC6
SOFTWARE
LYS A:164 , LYS A:166 , GLU A:196 , ASP E:44
binding site for residue GOL A 506
07
AC7
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:603 , HOH B:604 , HOH B:613 , HOH B:625 , HOH B:631
binding site for residue GDP B 501
08
AC8
SOFTWARE
GLN B:11 , ASP B:179 , GDP B:501 , HOH B:648
binding site for residue MG B 502
09
AC9
SOFTWARE
ARG B:401 , TYR C:262 , GLU C:434 , VAL C:435
binding site for residue GOL B 503
10
AD1
SOFTWARE
VAL B:177 , PRO B:222
binding site for residue GOL B 504
11
AD2
SOFTWARE
GLU B:27 , ALA B:233 , SER B:236 , GLY B:237 , PHE B:272 , ARG B:320 , PRO B:360 , SER B:374 , ALA B:375 , THR B:376
binding site for residue GOL B 505
12
AD3
SOFTWARE
GLU B:113
binding site for residue CA B 506
13
AD4
SOFTWARE
ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ILE B:165 , ASN B:197 , ASP B:199 , ARG B:253
binding site for residue MES B 507
14
AD5
SOFTWARE
THR A:179 , ALA A:180 , VAL A:181 , GLY B:237 , VAL B:238 , CYS B:241 , ALA B:250 , ASP B:251 , LYS B:254 , LEU B:255 , ASN B:258 , ALA B:317 , ILE B:318 , LYS B:352
binding site for residue 6ZR B 508
15
AD6
SOFTWARE
LYS B:105 , THR C:253 , THR C:257
binding site for residue GOL C 502
16
AD7
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , MG C:504 , HOH C:621 , HOH C:628 , LYS D:254
binding site for residue GTP C 503
17
AD8
SOFTWARE
GTP C:503 , HOH C:628
binding site for residue MG C 504
18
AD9
SOFTWARE
VAL C:177 , ARG C:221 , PRO C:222 , THR C:223 , TYR C:224 , GLN D:247
binding site for residue GOL C 505
19
AE1
SOFTWARE
SER C:287 , VAL C:288 , ASP C:322 , ASP C:327 , ARG C:373 , HOH C:601
binding site for residue GOL C 506
20
AE2
SOFTWARE
LYS C:163 , LYS C:164 , LYS C:166 , GLU C:196 , HIS C:197 , ASP C:199
binding site for residue GOL C 507
21
AE3
SOFTWARE
ASP C:431 , HOH C:626 , HOH C:672
binding site for residue IMD C 508
22
AE4
SOFTWARE
GLY C:410 , GLU C:411 , GOL D:504 , ARG E:112 , LEU E:116
binding site for residue IMD C 509
23
AE5
SOFTWARE
SER C:165 , LEU C:167 , GLN C:256
binding site for residue IMD C 510
24
AE6
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:142 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:603
binding site for residue GDP D 501
25
AE7
SOFTWARE
GLN D:11 , ASP D:179 , GDP D:501
binding site for residue MG D 502
26
AE8
SOFTWARE
VAL D:177 , PRO D:222 , TYR D:224
binding site for residue GOL D 503
27
AE9
SOFTWARE
IMD C:509 , ARG D:158 , PRO D:162 , ASP D:163 , ARG D:164 , ASP D:199 , ARG D:253
binding site for residue GOL D 504
28
AF1
SOFTWARE
GLU F:331
binding site for residue MG F 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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