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(-) Description

Title :  A NEW COMPLEX STRUCTURE OF TUBULIN WITH AN ALPHA-BETA UNSATURATED LACTONE
 
Authors :  Y. Wang, J. Naismith, X. Zhu
Date :  16 Nov 15  (Deposition) - 18 May 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Structural Protein, Tubulin Complex Alpha-Beta Unsaturated Lactone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Yang, Y. Wang, T. Wang, J. Jiang, C. H. Botting, H. Liu, Q. Chen, J. Yang, J. H. Naismith, X. Zhu, L. Chen
Pironetin Reacts Covalently With Cysteine-316 Of Alpha-Tubulin To Destabilize Microtubule.
Nat. Commun. V. 7 12103 2016
PubMed-ID: 27357539  |  Reference-DOI: 10.1038/NCOMMS12103

(-) Compounds

Molecule 1 - TUBULIN ALPHA-1B CHAIN
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: NSKN1
    Expression System Vector Type: PLASMID
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: ALPHA-TUBULIN UBIQUITOUS, TUBULIN K-ALPHA-1, TUBULIN ALPHA- UBIQUITOUS CHAIN, TUBULIN ALPHA SUBUNIT
 
Molecule 2 - TUBULIN BETA CHAIN
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-8C
    Expression System Vector Type: PLASMID
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: BETA-TUBULIN, TUBULIN BETA SUBUNIT
 
Molecule 3 - STATHMIN-4
    Chains: E
    Fragment: STATHMIN-LIKE DOMAIN, RESIDUES 49-189
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: STATHMIN-LIKE PROTEIN B3, RB3, ISTATHMIN-4
 
Molecule 4 - TUBULIN TYROSINE LIGASE
    Chains: F
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 15)

Asymmetric/Biological Unit (7, 15)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2CA3Ligand/IonCALCIUM ION
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GTP3Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
5MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MG4Ligand/IonMAGNESIUM ION
7X3H1Ligand/IonPIRONETIN

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:1439 , HOH A:2001 , HOH A:2002 , HOH A:2004 , HOH A:2005 , HOH A:2006 , HOH A:2007 , HOH A:2009 , LYS B:252BINDING SITE FOR RESIDUE GTP A1438
02AC2SOFTWAREGTP A:1438 , HOH A:2002 , HOH A:2004 , HOH A:2005 , HOH A:2006BINDING SITE FOR RESIDUE MG A1439
03AC3SOFTWAREASP A:39 , THR A:41 , GLY A:44 , GLU A:55BINDING SITE FOR RESIDUE CA A1440
04AC4SOFTWAREGLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:138 , GLY B:141 , GLY B:142 , THR B:143 , GLY B:144 , PRO B:171 , VAL B:175 , ASP B:177 , GLU B:181 , ASN B:204 , TYR B:222 , ASN B:226 , MG B:1430 , HOH B:2001 , HOH B:2002 , HOH B:2003 , HOH B:2004 , HOH B:2007 , HOH B:2008BINDING SITE FOR RESIDUE GDP B1429
05AC5SOFTWAREGLN B:11 , ASP B:177 , GDP B:1429 , HOH B:2002BINDING SITE FOR RESIDUE MG B1430
06AC6SOFTWAREGLU B:111 , TYR C:282BINDING SITE FOR RESIDUE CA B1431
07AC7SOFTWAREARG B:156 , PRO B:160 , ASP B:161 , ARG B:162 , ASN B:195 , ASP B:197 , ARG B:251BINDING SITE FOR RESIDUE MES B1432
08AC8SOFTWAREPHE B:294 , ASP B:295 , ALA B:296 , ASP B:304 , ARG B:306 , ASN B:337 , TYR B:340 , HOH B:2013BINDING SITE FOR RESIDUE MES B1433
09AC9SOFTWAREGLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:1441 , HOH C:2002 , HOH C:2003 , HOH C:2005 , HOH C:2006 , HOH C:2008 , HOH C:2015 , HOH C:2020 , LYS D:252BINDING SITE FOR RESIDUE GTP C1440
10BC1SOFTWAREGTP C:1440 , HOH C:2003 , HOH C:2005 , HOH C:2006 , HOH C:2008BINDING SITE FOR RESIDUE MG C1441
11BC2SOFTWAREASP C:39 , THR C:41 , GLY C:44 , GLU C:55BINDING SITE FOR RESIDUE CA C1442
12BC3SOFTWARELYS F:74 , ILE F:148 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , ARG F:222 , HIS F:239 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333BINDING SITE FOR RESIDUE ACP F1385
13BC4SOFTWAREGLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ALA D:97 , GLY D:98 , ASN D:99 , SER D:138 , GLY D:141 , GLY D:142 , THR D:143 , GLY D:144 , SER D:176 , GLU D:181 , ASN D:204 , TYR D:222 , ASN D:226 , MG D:1432BINDING SITE FOR RESIDUE GTP D1431
14BC5SOFTWAREGLU D:69 , GTP D:1431BINDING SITE FOR RESIDUE MG D1432

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FNV)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ala A:273 -Pro A:274
2Ala B:271 -Pro B:272
3Ala C:273 -Pro C:274
4Ala D:271 -Pro D:272
5Glu F:193 -Pro F:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FNV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FNV)

(-) Exons   (0, 0)

(no "Exon" information available for 5FNV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh................eeeee.............hhhhhhhhhhhhhh.....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhh...........eeeeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGAQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      |258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428         
                                                                                                                                                                                                                                                                                247|                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                 256                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhh...........hhhhh.hhhh.ee...ee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhh...hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee.........hhhhhhhhhhhhhh.....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh........eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv B   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
                                    11        21        31        41        51 ||     65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275|      289       299       309       319       329       339       349       359       369       379       389       399       409       419         
                                                                              53|                                                                                                                                                                                                                      275|                                                                                                                                                    
                                                                               58                                                                                                                                                                                                                       280                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh........eeeee...hhhhhh....hhhhhhhhhhhhhh.....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhh.............eeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv C   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430         


Chain D from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhh...........hhhhh.hhhh.eeee...eeee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee...hhhhhhhhhhhhhh.....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh........eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv D   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271 ||    291       301       311       321       331       341       351       361       371       381       391       401       411       421         
                                                                                                                                                                                                                                                                                                         273|                                                                                                                                                  
                                                                                                                                                                                                                                                                                                          284                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv E   6 MEVIELNKCTSGQSFEVILKPPDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 140
                                    15        25 ||     51        61        71        81        91       101       111       121       131         
                                                27|                                                                                                
                                                 44                                                                                                


Chain F from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh...eee.........eee......hhhhh........ee....hhhhh.hhhhhhhhhhhh............eee.......eee...eee....eeee..............eeeeeeeee.....eeee...eeee..................hhhhhh.....hhh.eeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhh........eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fnv F   1 MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTGNVWIAKGILISSEAHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLSIFIKLHHHHHH 384
                                    10        20        30        40        50        60        70        80        90       100  ||   150|      181       191       201       211       221       231       241     ||255       265       275       285       295       305       315       325       335       345       355     ||376        
                                                                                                                                103|   150|    166|                                                                247|                                                                                                          361|           
                                                                                                                                 144    159     180                                                                 252                                                                                                           373
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FNV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FNV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FNV)

(-) Gene Ontology  (30, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Ala D:271 - Pro D:272   [ RasMol ]  
    Glu F:193 - Pro F:194   [ RasMol ]  
 

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    Protein Cavities: castP
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    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  E1BQ43_CHICK | E1BQ43
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  STMN4_RAT | P63043
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TBA1B_PIG | Q2XVP4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TBB_PIG | P02554
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1BQ43_CHICK | E1BQ43: 5njh 5o7a
        STMN4_RAT | P63043: 1sa0 1sa1 1z2b 3du7 3e22 3hkb 3hkc 3hkd 3hke 3n2g 3n2k 3ryc 3ryf 3ryh 3ryi 3ut5 4eb6 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4x1i 4x1k 4x1y 4x20 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5gon 5iyz 5j2t 5j2u 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBA1B_PIG | Q2XVP4: 3j8x 3j8y 3jak 3jal 3jar 3jas 3jat 3jaw 4zhq 4zi7 4zol 5ca0 5ezy 5jqg 5kmg 5syc 5sye 5syf 5syg
        TBB_PIG | P02554: 1ffx 1ia0 1jff 1sa0 1sa1 1tub 1tvk 2hxf 2hxh 2wbe 3j6e 3j6f 3j6g 3j6h 3j6p 3j7i 3jak 3jal 3jar 3jas 3jat 3jaw 4abo 4zhq 4zi7 4zol 5bmv 5jqg 5kmg 5syc 5sye 5syf 5syg
UniProtKB/TrEMBL
        E1BQ43_CHICK | E1BQ43: 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5gon 5iyz 5j2t 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FNV)