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(-) Description

Title :  TUBULIN-LAULIMALIDE-EPOTHILONE A COMPLEX
 
Authors :  A. E. Prota, K. Bargsten, P. T. Northcote, M. Marsh, K. H. Altmann, J. H. M J. F. Diaz, M. O. Steinmetz
Date :  18 Dec 13  (Deposition) - 12 Mar 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Microtubule, Stathmin, Laulimalide, Epothilone A, Cell Cycle, Tubulin Fold, Cytoskeleton, Cell Cycle-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. E. Prota, K. Bargsten, P. T. Northcote, M. Marsh, K. H. Altmann, J. H. Miller, J. F. Diaz, M. O. Steinmetz
Structural Basis Of Microtubule Stabilization By Laulimalid And Peloruside A.
Angew. Chem. Int. Ed. Engl. V. 53 1621 2014
PubMed-ID: 24470331  |  Reference-DOI: 10.1002/ANIE.201307749

(-) Compounds

Molecule 1 - TUBULIN ALPHA-1B CHAIN
    Chains: A, C
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BRAIN
    Synonym: ALPHA-TUBULIN UBIQUITOUS, TUBULIN K-ALPHA-1, TUBULIN ALPHA- UBIQUITOUS CHAIN
 
Molecule 2 - TUBULIN BETA-2B CHAIN
    Chains: B, D
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BRAIN
 
Molecule 3 - STATHMIN-4
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 49-189
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: STATHMIN-LIKE PROTEIN B3, RB3
 
Molecule 4 - TUBULIN-TYROSINE LIGASE
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 18)

Asymmetric/Biological Unit (8, 18)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2CA3Ligand/IonCALCIUM ION
3EP2Ligand/IonEPOTHILONE A
4GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
5GTP2Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
6LLM1Ligand/IonLAULIMALIDE
7MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8MG6Ligand/IonMAGNESIUM ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:603 , HOH A:604 , HOH A:611 , HOH A:706 , LYS B:254BINDING SITE FOR RESIDUE GTP A 501
02AC2SOFTWAREGLU A:71 , GTP A:501 , HOH A:603 , HOH A:704 , HOH A:706BINDING SITE FOR RESIDUE MG A 502
03AC3SOFTWAREASP A:39 , THR A:41 , GLY A:44 , GLY A:45 , GLU A:55BINDING SITE FOR RESIDUE CA A 503
04AC4SOFTWAREGLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , MG B:504 , HOH B:601 , HOH B:605 , HOH B:606 , HOH B:615BINDING SITE FOR RESIDUE GDP B 501
05AC5SOFTWAREGLU B:71 , GDP B:501 , MG B:504 , HOH B:685BINDING SITE FOR RESIDUE MG B 502
06AC6SOFTWARELEU B:217 , LEU B:219 , ASP B:226 , HIS B:229 , ALA B:233 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , GLN B:281 , GLN B:282 , ARG B:284 , LEU B:371BINDING SITE FOR RESIDUE EP B 503
07AC7SOFTWAREGLN B:11 , ASP B:179 , GDP B:501 , MG B:502 , HOH B:684 , HOH C:618BINDING SITE FOR RESIDUE MG B 504
08AC8SOFTWAREGLN B:293 , PHE B:296 , ASP B:297 , SER B:298 , ARG B:308 , ASN B:334 , ASN B:339 , HOH B:622BINDING SITE FOR RESIDUE LLM B 505
09AC9SOFTWAREGLU B:113BINDING SITE FOR RESIDUE CA B 506
10BC1SOFTWAREARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , THR B:198 , ASP B:199 , ARG B:253 , HOH B:650BINDING SITE FOR RESIDUE MES B 507
11BC2SOFTWAREGLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:603 , HOH C:604 , HOH C:606 , HOH C:752 , LYS D:254BINDING SITE FOR RESIDUE GTP C 501
12BC3SOFTWAREGTP C:501 , HOH C:602 , HOH C:604 , HOH C:606BINDING SITE FOR RESIDUE MG C 502
13BC4SOFTWAREASP C:39 , THR C:41 , GLY C:44 , GLY C:45 , GLU C:55BINDING SITE FOR RESIDUE CA C 503
14BC5SOFTWAREGLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , SER D:178 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:604 , HOH D:660BINDING SITE FOR RESIDUE GDP D 501
15BC6SOFTWAREGLN D:11 , GDP D:501BINDING SITE FOR RESIDUE MG D 502
16BC7SOFTWARELEU D:217 , ASP D:226 , HIS D:229 , PRO D:274 , LEU D:275 , THR D:276 , ARG D:278 , GLN D:281BINDING SITE FOR RESIDUE EP D 503
17BC8SOFTWARELYS F:74 , ILE F:148 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333 , MG F:501BINDING SITE FOR RESIDUE ACP F 500
18BC9SOFTWAREARG F:202 , ARG F:222 , ASP F:318 , GLU F:331 , ACP F:500BINDING SITE FOR RESIDUE MG F 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O4I)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:273 -Pro A:274
2Gly B:58 -Asn B:59
3Ala B:273 -Pro B:274
4Arg B:278 -Gly B:279
5Arg B:320 -Gly B:321
6Ala C:273 -Pro C:274
7Ala D:273 -Pro D:274
8Glu F:193 -Pro F:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O4I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O4I)

(-) Exons   (0, 0)

(no "Exon" information available for 4O4I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4o4ia1 A:1-245 automated matches                                                                                                                                                                                                                    d4o4ia2 A:246-437 automated matches                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhh...................hhhh.eee.....eee.eeeee..hhhhhhhhh.......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee.............hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhh.........eeeeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       


Chain B from PDB  Type:PROTEIN  Length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4o4ib1 B:1-245 automated matches                                                                                                                                                                                                                  d4o4ib2 B:246-438 automated matches                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhhhhhhhhhhhhh............hhhhhhhhh.eeeee..eeee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhh...hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee......hhhhh..hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.......eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i B   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       370       380       390       400       410       420       430        
                                                                    42|                                                                                                                                                                                                                                                                                                                        360|                                                                     
                                                                     45                                                                                                                                                                                                                                                                                                                         369                                                                     


Chain C from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4o4ic1 C:1-245 automated matches                                                                                                                                                                                                                    d4o4ic2 C:246-440 automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhh..hhhhhhhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhh...hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee...hhhhhh....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhh..............eeeee................eeeeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i C   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440


Chain D from PDB  Type:PROTEIN  Length:431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4o4id1 D:1-245 automated matches                                                                                                                                                                                                                  d4o4id2 D:246-441 automated matches                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh.eee.....eee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee...hhhhhhhh..hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.......eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i D   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 441
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       370       380       390       400       410       420       430       440 
                                                                    42|                                                                                                                                                                                                                                                                                                                        360|                                                                        
                                                                     45                                                                                                                                                                                                                                                                                                                         369                                                                        


Chain E from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains d4o4ie_ E: Stathmin 4                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i E   6 MEVIELNKCTSGQSFEVILKPDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEA 143
                                    15        25||      52        62        72        82        92       102       112       122       132       142 
                                               26|                                                                                                   
                                                44                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhh..eee.........eee......hhhhh........ee.....hhhhhhhhhhhhhhhhh............eeee.......hhhhhhhhhhhhhhh.....eeee..........eee.hhhhhhhhhhh....eeeee............eeeeeeeeeee.....eeee...eeeeeeee..............hhhhhhhhh..........eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhh...........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o4i F   1 MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLAPTSIFIKL 378
                                    10        20        30        40        50        60        70        80        90       100    || 129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359  ||   377 
                                                                                                                                  105|                                                                                                                                                                                                                                          362|       
                                                                                                                                   125                                                                                                                                                                                                                                           371
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O4I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O4I)

(-) Gene Ontology  (31, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:273 - Pro A:274   [ RasMol ]  
    Ala B:273 - Pro B:274   [ RasMol ]  
    Ala C:273 - Pro C:274   [ RasMol ]  
    Ala D:273 - Pro D:274   [ RasMol ]  
    Arg B:278 - Gly B:279   [ RasMol ]  
    Arg B:320 - Gly B:321   [ RasMol ]  
    Glu F:193 - Pro F:194   [ RasMol ]  
    Gly B:58 - Asn B:59   [ RasMol ]  
 

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  4o4i
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
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  E1BQ43_CHICK | E1BQ43
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  STMN4_RAT | P63043
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TBA1B_BOVIN | P81947
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TBB2B_BOVIN | Q6B856
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
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    Interatomic Contacts of Structural Units: CSU
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  E1BQ43_CHICK | E1BQ43
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  STMN4_RAT | P63043
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TBA1B_BOVIN | P81947
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TBB2B_BOVIN | Q6B856
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1BQ43_CHICK | E1BQ43: 5njh 5o7a
        STMN4_RAT | P63043: 1sa0 1sa1 1z2b 3du7 3e22 3hkb 3hkc 3hkd 3hke 3n2g 3n2k 3ryc 3ryf 3ryh 3ryi 3ut5 4eb6 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4x1i 4x1k 4x1y 4x20 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5j2u 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBA1B_BOVIN | P81947: 3dco 3edl 3iz0 3j1t 3j1u 3j2u 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5bmv 5eib 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBB2B_BOVIN | Q6B856: 1sa0 1sa1 1tvk 1z2b 2p4n 2wbe 2xrp 3dco 3du7 3e22 3iz0 3j1t 3j1u 3j2u 4aqv 4aqw 4atu 4atx 4ck5 4ck6 4ck7 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5eib 5ezy 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m5i 5m5l 5m5m 5m5n 5m5o 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
UniProtKB/TrEMBL
        E1BQ43_CHICK | E1BQ43: 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g

(-) Related Entries Specified in the PDB File

4o4h SAME STRUCTURE IN COMPLEX WITH LAULIMALIDE
4o4j
4o4l