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(-) Description

Title :  CRYSTAL STRUCTURE OF TUBULIN-STATHMIN-TTL-VINBLASTINE COMPLEX
 
Authors :  Y. Wang, Q. Chen, R. Zhang
Date :  23 May 15  (Deposition) - 13 Jul 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Complex, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wang, F. W. Benz, Y. Wu, Q. Wang, Y. Chen, X. Chen, H. Li, Y. Zhang, R. Zhang, J. Yang
Structural Insights Into The Pharmacophore Of Vinca Domain Inhibitors Of Microtubules.
Mol. Pharmacol. V. 89 233 2016
PubMed-ID: 26660762  |  Reference-DOI: 10.1124/MOL.115.100149

(-) Compounds

Molecule 1 - TUBULIN ALPHA-1B CHAIN
    Chains: A, C
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA- UBIQUITOUS CHAIN
 
Molecule 2 - TUBULIN BETA CHAIN
    Chains: B, D
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: BETA-TUBULIN
 
Molecule 3 - STATHMIN-4
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 49-189
    Gene: STMN4
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: STATHMIN-LIKE PROTEIN B3,RB3
 
Molecule 4 - UNCHARACTERIZED PROTEIN
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TTL
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: TUBULIN-TYROSINE LIGASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 22)

Asymmetric/Biological Unit (8, 22)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2CA3Ligand/IonCALCIUM ION
3GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GOL7Ligand/IonGLYCEROL
5GTP2Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
6MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7MG4Ligand/IonMAGNESIUM ION
8VLB1Ligand/Ion(2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:605 , HOH A:608 , HOH A:609 , HOH A:616 , HOH A:623 , HOH A:631 , LYS B:254binding site for residue GTP A 501
02AC2SOFTWAREGTP A:501 , HOH A:605 , HOH A:608 , HOH A:609 , HOH A:631binding site for residue MG A 502
03AC3SOFTWAREASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:624binding site for residue CA A 503
04AC4SOFTWARELYS A:164 , LYS A:166 , GLU A:196 , ASP A:199 , ASP E:44binding site for residue GOL A 504
05AC5SOFTWAREASN A:216 , VAL A:275 , ILE A:276 , ALA A:294 , ASN A:300binding site for residue GOL A 505
06AC6SOFTWAREARG A:221 , TYR A:224binding site for residue GOL A 506
07AC7SOFTWAREGLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:601 , HOH B:604 , HOH B:618 , HOH B:620 , HOH B:622 , HOH B:633 , HOH B:634 , HOH B:641binding site for residue GDP B 501
08AC8SOFTWAREGLN B:11 , GDP B:501 , HOH B:604 , HOH B:622 , HOH B:653binding site for residue MG B 502
09AC9SOFTWAREGLU B:113 , HOH B:651binding site for residue CA B 503
10AD1SOFTWAREARG B:158 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253binding site for residue MES B 504
11AD2SOFTWAREPHE B:296 , ASP B:297 , ALA B:298 , ARG B:308 , VAL B:335 , ASN B:339 , TYR B:342 , HOH B:605binding site for residue MES B 505
12AD3SOFTWAREARG B:401 , GLU C:434 , GOL C:506binding site for residue GOL B 506
13AD4SOFTWAREGLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , MG C:502 , HOH C:609 , HOH C:613 , HOH C:627 , HOH C:649 , HOH C:653 , HOH C:655 , HOH C:662 , LYS D:254binding site for residue GTP C 501
14AD5SOFTWAREGTP C:501 , HOH C:613 , HOH C:627 , HOH C:649 , HOH C:662binding site for residue MG C 502
15AD6SOFTWAREASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:645binding site for residue CA C 503
16AD7SOFTWAREASP C:205 , GLU C:207 , LYS C:304 , ARG C:390 , HOH C:634binding site for residue GOL C 504
17AD8SOFTWAREALA C:19 , GLU C:22 , ARG C:229 , SER C:232 , VAL C:363 , HOH C:665binding site for residue GOL C 505
18AD9SOFTWAREGOL B:506 , ASP C:431 , HOH C:641binding site for residue GOL C 506
19AE1SOFTWAREPRO B:175 , LYS B:176 , VAL B:177 , ASP B:179 , TYR B:210 , PHE B:214 , THR B:220 , PRO B:222 , THR B:223 , LEU B:227 , PRO C:325 , ASN C:329 , PHE C:351 , VAL C:353binding site for residue VLB C 507
20AE2SOFTWAREGLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , SER D:178 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:603binding site for residue GDP D 501
21AE3SOFTWAREGDP D:501binding site for residue MG D 502
22AE4SOFTWARELYS F:74 , ILE F:148 , GLN F:183 , LYS F:184 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , ARG F:222 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333binding site for residue ACP F 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BMV)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Ala A:273 -Pro A:274
2Ala B:273 -Pro B:274
3Ala C:273 -Pro C:274
4Thr C:349 -Gly C:350
5Ala D:273 -Pro D:274
6Glu F:193 -Pro F:194
7Ala F:362 -Asp F:363

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BMV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BMV)

(-) Exons   (0, 0)

(no "Exon" information available for 5BMV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhh..................hhhhh.eee.....eee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee.............hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhh.........eeeeeeee................eeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430         


Chain B from PDB  Type:PROTEIN  Length:427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeehhhhhhhhhhhhhhhhhhh.................hhhh.eeee...eeee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee............hhhhhhhhhhhhhhh....hhhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhhh.......eeeeee.........eeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv B   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     ||283       293       303       313       323       333       343       353      |371       381       391       401       411       421       431       
                                                                    42|                                                                                                                                                                                                                                      278|                                                                             360|                                                                     
                                                                     45                                                                                                                                                                                                                                       280                                                                              369                                                                     


Chain C from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhh.......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee...hhhhhh....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhh...........eeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv C   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440


Chain D from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhh...........hhhhh.hhhh.eeee...eeee.eeeee..hhhhhhhhhh.hhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.......eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv D   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 441
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   ||  291       301       311       321       331       341       351       369       379       389       399       409       419       429       439  
                                                                    42|                                                                                                                                                                                                                                    276|                                                                       360|                                                                        
                                                                     45                                                                                                                                                                                                                                     286                                                                        369                                                                        


Chain E from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv E   6 MEVIELNKCTSGQSFEVILKPPSDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEA 143
                                    15        25  ||    50        60        70        80        90       100       110       120       130       140   
                                                 28|                                                                                                   
                                                  44                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh...eee.........eee......hhhhh........ee.....hhhhhhhhhhhhhhhhh............eeee......hhhhhhhhhh..........eee........hhhhhhhhhh....eeeee..............eeeeeeeee.....eeee...eeee..................hhhhhhh......hhh.eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeeeeee.....eeeeeee........hhhhhhhhhhhhhh...........eee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmv F   1 MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNTDEREVFLAAYNRRREGREGNVWIAKGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTSIFIKLHHHHHH 384
                                    10        20        30        40        50        60        70        80        90       100   ||  130       140       150|      168       178       188       198       208       218       228       238       248||     260       270       280       290       300       310       320       330       340       350       360  ||   378      
                                                                                                                                 104|                      150|                                                                                       249|                                                                                                            363|            
                                                                                                                                  125                       159                                                                                        252                                                                                                             372
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BMV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BMV)

(-) Gene Ontology  (30, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:273 - Pro A:274   [ RasMol ]  
    Ala B:273 - Pro B:274   [ RasMol ]  
    Ala C:273 - Pro C:274   [ RasMol ]  
    Ala D:273 - Pro D:274   [ RasMol ]  
    Ala F:362 - Asp F:363   [ RasMol ]  
    Glu F:193 - Pro F:194   [ RasMol ]  
    Thr C:349 - Gly C:350   [ RasMol ]  
 

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  5bmv
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  E1BQ43_CHICK | E1BQ43
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  STMN4_RAT | P63043
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  TBA1B_BOVIN | P81947
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  TBB_PIG | P02554
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  E1BQ43_CHICK | E1BQ43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1BQ43_CHICK | E1BQ43: 5njh 5o7a
        STMN4_RAT | P63043: 1sa0 1sa1 1z2b 3du7 3e22 3hkb 3hkc 3hkd 3hke 3n2g 3n2k 3ryc 3ryf 3ryh 3ryi 3ut5 4eb6 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4x1i 4x1k 4x1y 4x20 4yj2 4yj3 4zhq 4zi7 4zol 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5j2u 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBA1B_BOVIN | P81947: 3dco 3edl 3iz0 3j1t 3j1u 3j2u 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5eib 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBB_PIG | P02554: 1ffx 1ia0 1jff 1sa0 1sa1 1tub 1tvk 2hxf 2hxh 2wbe 3j6e 3j6f 3j6g 3j6h 3j6p 3j7i 3jak 3jal 3jar 3jas 3jat 3jaw 4abo 4zhq 4zi7 4zol 5fnv 5jqg 5kmg 5syc 5sye 5syf 5syg
UniProtKB/TrEMBL
        E1BQ43_CHICK | E1BQ43: 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4yj2 4yj3 4zhq 4zi7 4zol 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5BMV)