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(-) Description

Title :  TUBULIN-COLCHICINE-VINBLASTINE: STATHMIN-LIKE DOMAIN COMPLEX
 
Authors :  B. Gigant, C. Wang, R. B. G. Ravelli, F. Roussi, M. O. Steinmetz, P. A. Cur A. Sobel, M. Knossow
Date :  08 Mar 05  (Deposition) - 31 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Alpha-Tubulin, Beta-Tubulin, Colchicine, Gtpase, Microtubule, Stathmin, Tubulin, Vinblastine, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Gigant, C. Wang, R. B. Ravelli, F. Roussi, M. O. Steinmetz, P. A. Curmi, A. Sobel, M. Knossow
Structural Basis For The Regulation Of Tubulin By Vinblastine.
Nature V. 435 519 2005
PubMed-ID: 15917812  |  Reference-DOI: 10.1038/NATURE03566

(-) Compounds

Molecule 1 - TUBULIN ALPHA CHAIN
    Chains: A, C
    Organ: BRAIN
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BRAIN
 
Molecule 2 - TUBULIN BETA CHAIN
    Chains: B, D
    Organ: BRAIN
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BRAIN
 
Molecule 3 - RB3 STATHMIN-LIKE DOMAIN 4
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-8C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: STMN4
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: STATHMIN-LIKE PROTEIN B3, RB3-SLD

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric/Biological Unit (5, 9)
No.NameCountTypeFull Name
1CN22Ligand/Ion2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE
2GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3GTP2Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
4MG2Ligand/IonMAGNESIUM ION
5VLB1Ligand/Ion(2ALPHA,2'BETA,3BETA,4ALPHA,5BETA)-VINCALEUKOBLASTINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:99 , GLY A:144 , THR A:145 , GTP A:600BINDING SITE FOR RESIDUE MG A 500
2AC2SOFTWAREALA C:99 , ASN C:101 , GLY C:144 , GTP C:601 , LYS D:254BINDING SITE FOR RESIDUE MG C 501
3AC3SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:69 , GLU A:71 , ASP A:98 , ALA A:99 , SER A:140 , GLY A:142 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , PRO A:173 , VAL A:177 , SER A:178 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:500 , LYS B:254BINDING SITE FOR RESIDUE GTP A 600
4AC4SOFTWAREGLY C:10 , GLN C:11 , ALA C:12 , ILE C:16 , ASP C:69 , GLU C:71 , ASP C:98 , ALA C:99 , SER C:140 , GLY C:142 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ILE C:171 , PRO C:173 , VAL C:177 , SER C:178 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:501 , LYS D:254BINDING SITE FOR RESIDUE GTP C 601
5AC5SOFTWAREGLY B:10 , GLN B:11 , CYS B:12 , ASN B:101 , SER B:140 , GLY B:142 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , SER B:178 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228BINDING SITE FOR RESIDUE GDP B 602
6AC6SOFTWAREGLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ASN D:101 , SER D:140 , GLY D:142 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , PRO D:173 , VAL D:177 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228BINDING SITE FOR RESIDUE GDP D 603
7AC7SOFTWARESER A:178 , THR A:179 , VAL A:181 , VAL B:238 , CYS B:241 , LEU B:242 , ALA B:250 , LEU B:255 , VAL B:315 , ALA B:316 , LYS B:352 , ILE B:378BINDING SITE FOR RESIDUE CN2 B 700
8AC8SOFTWARESER C:178 , THR C:179 , ALA C:180 , VAL C:181 , VAL D:238 , CYS D:241 , LEU D:242 , ALA D:250 , LEU D:255 , ASN D:258 , MET D:259 , VAL D:315 , ALA D:316 , LYS D:352 , ILE D:378BINDING SITE FOR RESIDUE CN2 D 701
9AC9SOFTWAREPRO B:175 , LYS B:176 , VAL B:177 , ASP B:179 , TYR B:210 , THR B:221 , PRO B:222 , THR B:223 , TYR B:224 , PRO C:325 , ASN C:329 , PHE C:351 , VAL C:353 , ILE C:355BINDING SITE FOR RESIDUE VLB C 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z2B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z2B)

(-) PROSITE Motifs  (4, 7)

Asymmetric/Biological Unit (4, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STATHMIN_3PS51663 Stathmin-like (SLD) domain profile.STMN4_RAT48-189  1E:5-141
2STATHMIN_1PS00563 Stathmin family signature 1.STMN4_RAT84-93  1E:45-49
3STATHMIN_2PS01041 Stathmin family signature 2.STMN4_RAT117-126  1E:73-82
4TUBULINPS00227 Tubulin subunits alpha, beta, and gamma signature.TBB2B_BOVIN140-146
 		  2B:142-148
D:142-148
TBA1D_BOVIN142-148
 		  2A:142-148
C:142-148

(-) Exons   (4, 8)

Asymmetric/Biological Unit (4, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000053461ENSBTAE00000067590chr23:51448815-51448966152TBB2B_BOVIN1-19192B:2-19
D:2-19		18
18
1.2ENSBTAT000000053462ENSBTAE00000380542chr23:51449714-51449822109TBB2B_BOVIN20-56372B:20-58 (gaps)
D:20-58 (gaps)		39
39
1.3ENSBTAT000000053463ENSBTAE00000419208chr23:51450093-51450203111TBB2B_BOVIN56-93382B:58-95
D:58-95		38
38
1.4ENSBTAT000000053464ENSBTAE00000067601chr23:51450543-514516031061TBB2B_BOVIN93-4453532B:95-438 (gaps)
D:95-438 (gaps)		344
344

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:427
 aligned with TBA1D_BOVIN | Q2HJ86 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:436
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
          TBA1D_BOVIN     2 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGM 437
               SCOP domains d1z2ba1 A:2-245 Tubulin alpha-subuni         t                                                                                                                                                                                                      d1z2ba2 A:246-437 Tubulin alpha-subunit                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhhh........---------..................eeeee...hhhhhhh........hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhh.....eeeeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........ee................hhhhhhhhhhhhhhh..........eee.eeeeee..hhhhhhhhhhhhhhh.............eeeee................ee...eeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------TUBULIN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z2b A   2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP---------DSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGI 437
                                    11        21        31     |   -     |  51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
                                                              37        47                                                                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:419
 aligned with TBB2B_BOVIN | Q6B856 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:427
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       
          TBB2B_BOVIN     2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
               SCOP domains d1z2bb1 B:2-245 Tubulin beta-subunit                                                                                                                                                                                                              d1z2bb2 B:246-438 Tubulin beta-s        ubunit                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhh.............hhhhhh..............eeee....hhhhhhhh.......hhh.ee........hhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhh......eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhh......eeeeee.....--------..hhhhhhhhhhhhhh..........eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeeee..........eeeeeee..hhhhhhhhhhhhhh.......hhhhhh....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------TUBULIN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1          Exon 1.2  PDB: B:20-58 (gaps)        ------------------------------------Exon 1.4  PDB: B:95-438 (gaps) UniProt: 93-445 [INCOMPLETE]                                                                                                                                                                                                                                                                                      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------Exon 1.3  PDB: B:58-95 UniProt: 56-93 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1z2b B   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS--------LTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    11        21        31        41  ||    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273   |     -  |    293       303       313       323       333       343       353      |371       381       391       401       411       421       431       
                                                                     44|                                                                                                                                                                                                                                   277      286                                                                       360|                                                                     
                                                                      47                                                                                                                                                                                                                                                                                                                       369                                                                     


Chain C from PDB  Type:PROTEIN  Length:427
 aligned with TBA1D_BOVIN | Q2HJ86 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:436
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
          TBA1D_BOVIN     2 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGM 437
               SCOP domains d1z2bc1 C:2-245 Tubulin alpha-subunit                                                                                                                                                                                                               d1z2bc2 C:246-437 Tubulin alpha-su     bunit                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhhh.............----..................eeeee....hhhhhh........hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh........ee.........-----..hhhhhhhhhhhhhhh..........eee.eeeeee..hhhhhhhhhhhhhhh.............eeee.................ee...eeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------TUBULIN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z2b C   2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI----DSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAE-----QLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGI 437
                                    11        21        31        41|    |  51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       | -   |   291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
                                                                   42   47                                                                                                                                                                                                                                     279   285                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:419
 aligned with TBB2B_BOVIN | Q6B856 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:427
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       
          TBB2B_BOVIN     2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
               SCOP domains d1z2bd1 D:2-245 Tubulin beta-subunit                                                                                                                                                                                                              d1z2bd2 D:246-438 Tubulin beta-s        ubunit                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Tubulin-1z2bD01 D:3-226                                                                                                                                                                                                       ------------------------------------Tubulin_C-1z2bD        03 D:263-393                                                                                        --------------------------------------------- Pfam domains (1)
           Pfam domains (2) -Tubulin-1z2bD02 D:3-226                                                                                                                                                                                                       ------------------------------------Tubulin_C-1z2bD        04 D:263-393                                                                                        --------------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhh............hhhhhhhhhh............eeee....hhhhhhhh.......hhh.ee........hhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhh......eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhh......eeeeee.....--------..hhhhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhhhhh.......eeeeee..........eeeeeee..hhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------TUBULIN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1          Exon 1.2  PDB: D:20-58 (gaps)        ------------------------------------Exon 1.4  PDB: D:95-438 (gaps) UniProt: 93-445 [INCOMPLETE]                                                                                                                                                                                                                                                                                      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------Exon 1.3  PDB: D:58-95 UniProt: 56-93 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1z2b D   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS--------LTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    11        21        31        41  ||    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273   |     -  |    293       303       313       323       333       343       353      |371       381       391       401       411       421       431       
                                                                     44|                                                                                                                                                                                                                                   277      286                                                                       360|                                                                     
                                                                      47                                                                                                                                                                                                                                                                                                                       369                                                                     


Chain E from PDB  Type:PROTEIN  Length:124
 aligned with STMN4_RAT | P63043 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:138
                                    57        67        77        87        97       107       117       127       137       147       157       167       177        
            STMN4_RAT    48 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 185
               SCOP domains d1z2be1 E:4-141 Stathmin 4                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -Stathmin-1z2bE01 E:5-141                                                                                                                  Pfam domains
         Sec.struct. author .............eeeee.........--------------...............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..hhhhhh....hhhhhh.hhhhhhh........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) STATHMIN_3  PDB: E:5-141 UniProt: 48-189                                                                                                   PROSITE (1)
                PROSITE (2) ------------------------------------STATHMIN_1-----------------------STATHMIN_2----------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1z2b E   4 ADMEVIELNKCTSGQSFEVILKPPSFD--------------PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 141
                                    13        23      |  -         - |      53        63        73        83        93       103       113       123       133        
                                                     30             45
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 9)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z2B)

(-) Pfam Domains  (3, 5)

Asymmetric/Biological Unit
(-)
Clan: Tubulin-like (34)
(-)
Clan: no clan defined [family: Stathmin] (4)

(-) Gene Ontology  (20, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C   (TBA1D_BOVIN | Q2HJ86)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
biological process
    GO:0007017    microtubule-based process    Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

Chain B,D   (TBB2B_BOVIN | Q6B856)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
biological process
    GO:0007017    microtubule-based process    Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
    GO:0001764    neuron migration    The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain E   (STMN4_RAT | P63043)
molecular function
    GO:0015631    tubulin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of tubulin, including microtubules.
biological process
    GO:0007019    microtubule depolymerization    The removal of tubulin heterodimers from one or both ends of a microtubule.
    GO:0031175    neuron projection development    The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0051493    regulation of cytoskeleton organization    Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
    GO:0031110    regulation of microtubule polymerization or depolymerization    Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030426    growth cone    The migrating motile tip of a growing nerve cell axon or dendrite.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.

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  1z2b
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  STMN4_RAT | P63043
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  TBA1D_BOVIN | Q2HJ86
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  TBB2B_BOVIN | Q6B856
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STMN4_RAT | P63043: 1sa0 1sa1 3du7 3e22 3hkb 3hkc 3hkd 3hke 3n2g 3n2k 3ryc 3ryf 3ryh 3ryi 3ut5 4eb6 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4x1i 4x1k 4x1y 4x20 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5j2u 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBA1D_BOVIN | Q2HJ86: 1jff 1sa0 1sa1 1tvk 2wbe 2xrp 3edl 3iz0 4aqv 4aqw 4atu 4atx 4ck5 4ck6 4ck7 5m5i 5m5l 5m5m 5m5n 5m5o
        TBB2B_BOVIN | Q6B856: 1sa0 1sa1 1tvk 2p4n 2wbe 2xrp 3dco 3du7 3e22 3iz0 3j1t 3j1u 3j2u 4aqv 4aqw 4atu 4atx 4ck5 4ck6 4ck7 4i4t 4i50 4i55 4ihj 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5eib 5ezy 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m5i 5m5l 5m5m 5m5n 5m5o 5m7e 5m7g 5m8d 5m8g 5njh 5o7a

(-) Related Entries Specified in the PDB File

1sa0 TUBULIN-COLCHICINE: STATHMIN-LIKE DOMAIN COMPLEX
1sa1 TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX