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(-) Description

Title :  INTEGRIN ALPHA V BETA 6 IN COMPLEX WITH PRO-TGF-BETA
 
Authors :  X. Dong, B. Zhao, T. A. Springer
Date :  18 Dec 15  (Deposition) - 25 Jan 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.49
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Integrin, Tgf-Beta, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Dong, B. Zhao, R. E. Iacob, J. Zhu, A. C. Koksal, C. Lu, J. R. Engen, T. A. Springer
Force Interacts With Macromolecular Structure In Activation Of Tgf-Beta.
Nature V. 542 55 2017
PubMed-ID: 28117447  |  Reference-DOI: 10.1038/NATURE21035

(-) Compounds

Molecule 1 - INTEGRIN ALPHA-V
    Chains: A, E
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 31-627
    Gene: ITGAV, MSK8, VNRA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: VITRONECTIN RECEPTOR SUBUNIT ALPHA
 
Molecule 2 - INTEGRIN BETA-6
    Chains: B, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 128-378
    Gene: ITGB6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - TRANSFORMING GROWTH FACTOR BETA-1
    Chains: C, D, G, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 34-390
    Gene: TGFB1, TGFB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGF-BETA-1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 80)

Asymmetric/Biological Unit (5, 80)
No.NameCountTypeFull Name
1BMA12Ligand/IonBETA-D-MANNOSE
2CA8Ligand/IonCALCIUM ION
3MAN22Ligand/IonALPHA-D-MANNOSE
4MN6Ligand/IonMANGANESE (II) ION
5NAG32Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292binding site for residue CA A 2001
02AC2SOFTWAREASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357binding site for residue CA A 2002
03AC3SOFTWAREASP A:414 , ASP A:416 , ASN A:418 , TYR A:420 , ASP A:422binding site for residue CA A 2003
04AC4SOFTWAREASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238binding site for residue CA A 2004
05AC5SOFTWARESER B:127 , ASP B:130 , ASP B:131 , ASP B:254 , HOH B:2103binding site for residue MN B 2001
06AC6SOFTWARESER B:125 , SER B:127 , GLU B:223 , HOH B:2101 , HOH B:2102 , ASP D:217binding site for residue MN B 2002
07AC7SOFTWAREGLU B:162 , ASN B:218 , ASP B:220 , PRO B:222 , GLU B:223binding site for residue MN B 2003
08AC8SOFTWAREASP E:284 , ASN E:286 , ASP E:288 , TYR E:290 , ASP E:292binding site for residue CA E 2001
09AC9SOFTWAREASP E:349 , ASP E:351 , ASP E:353 , PHE E:355 , ASP E:357binding site for residue CA E 2002
10AD1SOFTWAREASP E:414 , ASP E:416 , ASN E:418 , TYR E:420 , ASP E:422binding site for residue CA E 2003
11AD2SOFTWAREASP E:230 , ASN E:232 , ASP E:234 , ILE E:236 , ASP E:238 , ASP E:257binding site for residue CA E 2004
12AD3SOFTWARESER F:127 , ASP F:130 , ASP F:131 , ASP F:254binding site for residue MN F 2001
13AD4SOFTWARESER F:125 , SER F:127 , GLU F:223 , HOH F:2101 , HOH F:2102 , ASP H:217binding site for residue MN F 2002
14AD5SOFTWAREGLU F:162 , ASN F:218 , ASP F:220 , PRO F:222 , GLU F:223binding site for residue MN F 2003
15AD6SOFTWAREGLU A:15 , ASN A:44 , GLU A:52binding site for Poly-Saccharide residues NAG A 2005 through BMA A 2007 bound to ASN A 44
16AD7SOFTWAREPHE A:231 , ASN A:232 , ASP A:257 , ASN A:260 , TYR A:265 , ALA A:322 , ARG E:550 , LYS H:134 , VAL H:135 , PRO H:160 , ASP H:162binding site for Poly-Saccharide residues NAG A 2008 through MAN A 2013 bound to ASN A 260
17AD8SOFTWARETHR A:212 , ALA A:213 , GLN A:214 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266 , LYS E:82binding site for Poly-Saccharide residues NAG A 2014 through MAN A 2020 bound to ASN A 266
18AD9SOFTWAREPRO A:452 , ASN A:459 , THR A:461 , CYS A:473 , ASN A:475 , GLU A:538binding site for Poly-Saccharide residues NAG A 2021 through MAN A 2024 bound to ASN A 459
19AE1SOFTWAREGLN A:495 , ASN A:525binding site for Mono-Saccharide NAG A 2025 bound to ASN A 525
20AE2SOFTWARELYS A:502 , PHE A:559 , ALA A:585 , ASN A:586binding site for Poly-Saccharide residues NAG A 2026 through NAG A 2027 bound to ASN A 586
21AE3SOFTWAREASN B:243binding site for Mono-Saccharide NAG B 2004 bound to ASN B 243
22AE4SOFTWAREGLU C:46 , ASN C:53 , ARG C:56binding site for Poly-Saccharide residues NAG C 401 through MAN C 404 bound to ASN C 53
23AE5SOFTWAREALA B:177 , PHE B:186 , ASN D:53 , ARG D:56binding site for Poly-Saccharide residues NAG D 401 through MAN D 404 bound to ASN D 53
24AE6SOFTWAREGLU E:15 , GLY E:16 , ASN E:44 , GLU E:52binding site for Poly-Saccharide residues NAG E 2005 through BMA E 2007 bound to ASN E 44
25AE7SOFTWAREARG A:550 , LYS D:134 , VAL D:135 , ASP D:162 , PHE E:231 , ASN E:232 , ASP E:257 , LYS E:259 , ASN E:260 , TYR E:265 , ALA E:322binding site for Poly-Saccharide residues NAG E 2008 through MAN E 2013 bound to ASN E 260
26AE8SOFTWARELYS A:82 , THR E:212 , ALA E:213 , GLN E:214 , TYR E:254 , TYR E:256 , SER E:263 , LEU E:264 , ASN E:266binding site for Poly-Saccharide residues NAG E 2014 through MAN E 2020 bound to ASN E 266
27AE9SOFTWAREILE E:454 , ASN E:459 , THR E:461 , CYS E:473 , ASN E:475 , GLU E:538binding site for Poly-Saccharide residues NAG E 2021 through MAN E 2024 bound to ASN E 459
28AF1SOFTWAREASN E:525binding site for Mono-Saccharide NAG E 2025 bound to ASN E 525
29AF2SOFTWARELYS E:502 , PHE E:559 , ALA E:585 , ASN E:586binding site for Poly-Saccharide residues NAG E 2026 through NAG E 2027 bound to ASN E 586
30AF3SOFTWAREASN F:243binding site for Mono-Saccharide NAG F 2004 bound to ASN F 243
31AF4SOFTWAREASN G:53 , ARG G:56binding site for Poly-Saccharide residues NAG G 401 through MAN G 404 bound to ASN G 53
32AF5SOFTWAREPHE F:186 , ASN H:53 , ARG H:56binding site for Poly-Saccharide residues NAG H 401 through MAN H 406 bound to ASN H 53

(-) SS Bonds  (37, 37)

Asymmetric/Biological Unit
No.Residues
1A:59 -A:67
2A:108 -A:128
3A:142 -A:155
4A:401 -B:270
5A:462 -A:473
6A:479 -A:536
7B:180 -B:187
8B:235 -B:276
9C:194 -D:196
10C:196 -D:194
11C:256 -C:265
12C:264 -C:327
13C:293 -C:358
14C:297 -C:360
15C:326 -D:326
16D:256 -D:265
17D:264 -D:327
18D:293 -D:358
19D:297 -D:360
20E:59 -E:67
21E:108 -E:128
22E:142 -E:155
23E:401 -F:270
24E:462 -E:473
25E:479 -E:536
26F:180 -F:187
27F:235 -F:276
28G:194 -H:196
29G:196 -H:194
30G:256 -G:265
31G:264 -G:327
32G:293 -G:358
33G:297 -G:360
34G:326 -H:326
35H:264 -H:327
36H:293 -H:358
37H:297 -H:360

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Tyr A:451 -Pro A:452
2Ser B:166 -Pro B:167
3Ile B:183 -Pro B:184
4Val C:39 -Pro C:40
5Glu C:284 -Pro C:285
6Glu D:284 -Pro D:285
7Tyr E:451 -Pro E:452
8Ser F:166 -Pro F:167
9Ile F:183 -Pro F:184
10Val G:39 -Pro G:40
11Glu G:284 -Pro G:285
12Glu H:284 -Pro H:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FFO)

(-) Exons   (0, 0)

(no "Exon" information available for 5FFO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:589
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..........eeee........eeeeee..............eeeeee...eee.........eee..ee.ee.........eeee..eeeeee...ee............eeeee....eeee.....................eee....eeeeee.hhhhhh.eeeeeehhhhhhh.............ee....hhhhh.......eeee........eeeeee.hhhhhh.eeeee......eeeeee...........eeee........eeeeee...eee.....eee..eeeeeee.....eeeeeee...........eeeee........eeeeee...hhhhh.eeeee.ee..ee.....eeee............eeeeeeeee........eeeeee....eeeee....eeeeeeeeeee.................eeeeeeeeeeee......eeeeeeeeee...........eee......eeeeeeeee.....eeeeeeeee.hhhhh......eeeeeeeee.hhhhh.......ee.......eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo A   1 FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSGCPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLD 596
                                    10        20        30        40        50        60||      73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463 ||    477       487       497       507       517       527       537       547       557       567       577       587         
                                                                                       61|                                                                                                                                                                                                                                                                                                                                                                                                             465|                                                                                                                              
                                                                                        65                                                                                                                                                                                                                                                                                                                                                                                                              470                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhh..eeeeeeee...........hhhhhhh..............eeeeeeee..hhhhhhhhhh...........hhhhhhhhhhhh..........eeeeeee........hhhhh............................hhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhh...eeee....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo B 113 DYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEEL 354
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  


Chain C from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhh.........eeeeeee..................eeeeeehhhhhhhh.....eeeeeee..........eeeeeeee...eeeeeeeee..........eeehhhhhhhhhhh...eeeeeeee.........................eeeeee.hhhhhh..hhhhhh.......eee..ee..........eee...ee..eee............eeee..eeeeeeeeee..eeeeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo C   8 DMELVKRKRIEAIRGQILSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAADYYAKEVTRVLMVETHNEIYDKFKQSTHSIYMFFQTSELREAVPEPVLLSRAELRLLRLKLKVEQHVELYQKYSQNSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYPGASAAPCCVPQALEPLPIVYYVGRKPKVEQLSNMIVRSCKCS 361
                                    17        27        37        47        57  ||    78        88        98       108       118       128       138       148       158       168       178       188       208       218       228       238 ||    257       267       277       287       297 ||    326       336       346       356     
                                                                               60|                                                                                                                         196|                              240|                                              299|                                          
                                                                                72                                                                                                                          207                               250                                               319                                          


Chain D from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh................hhhhhhhhhhhh.............eeeeeee.................eeeeee...hhhhhh.hhh.eeeeeee..........eeeeeeee...eeeeeeeee...........eehhhhhhhhhhh....eeeeeee....................hhhhhhhh...eeeeee................eee..............eee.......eee.........................eeee..eeeeeeee.....eeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo D   7 IDMELVKRKRIEAIRGQILSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAGEPEADYYAKEVTRVLMVETHNEIYDKFKQSTHSIYMFFQTSELREAVPEPVLLSRAELRLLRLKLKVEQHVELYQKYSQNSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCDTLQVDINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLVLALYNQHNPGASAAPCCVPQALEPLPIVYYVRKPKVEQLSNMIVRSCKCS 361
                                    16        26        36        46        56     || 73        83        93       103       113       123       133       143       153       163       173       183       193   ||  207       217       227       237  ||   262       272       282       292       302||     318       328       338  ||   349       359  
                                                                                  62|                                                                                                                            197|                                   240|                                            303|                            341|                  
                                                                                   70                                                                                                                             202                                    256                                             310                             343                  


Chain E from PDB  Type:PROTEIN  Length:587
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..........eeee........eeeeee..............eeeeee......eeee........eee..ee.ee.........eeee..eeeeee...ee............eeeee....eeee.....................eee....eeeeee.hhhhhh.eeeeeehhhhhhh.............ee....hhhhh.......eeee........eeeeee.hhhhhh.eeeee......eeeeee...........eeee........eeeeee...eee.....eee..eeeeeee.....eeeeeee...........eeeee........eeeeee...hhhhh.eeeee.ee..ee.....eeee...............eeeeee........eeeeeehhh.eeeee....eeeeeeeeeee.................eeeeeeeeeeee......eeeeeeeeee...........eee......eeeeeeeee.....eeeeeeeee.hhhhh......eeeeeeeee.hhhhh.......ee.......eeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo E   1 FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSGCPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQA 591
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460    || 474       484       494       504       514       524       534       544       554       564       574       584       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          465|                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           470                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhh..eeeeeeee...........hhhhhhh..............eeeeeeee..hhhhhhhhhh...........hhhhhhhhhhhh..........eeeeeee........hhhhh............................hhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh...eeee....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo F 113 DYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEEL 354
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  


Chain G from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhh.........eeeeeee..................eeeeeehhhhhhhh.....eeeeeee..........eeeeeeee...eeeeeeeee..........eeehhhhhhhhhhh...eeeeeeee..........................eeeeee.hhhhhh..hhhhhh.......eee..ee..........eee...ee..eee.......eeee..eeeeeeeeee..eeeeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo G  10 ELVKRKRIEAIRGQILSKLRLASPPSEVPPGPLPEAVLALYNSTRDRVAADYYAKEVTRVLMVETHNEIYDKFKQSTHSIYMFFQTSELREAVPEPVLLSRAELRLLRLKLKVEQHVELYQKYSQNSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCDINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYAPCCVPQALEPLPIVYYVGRKPKVEQLSNMIVRSCKCS 361
                                    19        29     || 41        51        72        82        92       102       112       122       132       142       152       162       172       182       192   ||  211       221       231       250       260       270       280       290       324       334       344       354       
                                                    35|                    60|                                                                                                                         196|                               240|                                              299|                                     
                                                     38                     72                                                                                                                          206                                250                                               324                                     


Chain H from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhh............eeeeeee.................eeeeee...hhhhhh.hhh.eeeeeee..........eeeeeeee...eeeeeeeee..........eeehhhhhhhhhhh....eeeeeee........................hhhhhhhh...eeeeee.............eee..............eee.......eee..........................eeee..eeeeeeee.....eeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffo H   5 KTIDMELVKRKRIEAIRGQILSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAGPEADYYAKEVTRVLMVETHNEIYDKFKQSTHSIYMFFQTSELREAVPEPVLLSRAELRLLRLKLKVEQHVELYQKYSQNSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCDSRDNTLQVDINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLDVLALYNQHNPGASAAPCCVPQALEPLPIVYYVRKPKVEQLSNMIVRSCKCS 361
                                    14        24        34        44        54      ||72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       260       270       280       290       300   ||  315       325       335     ||346       356     
                                                                                   61|                                                                                                                                                                       240|                                          304|                            341|                  
                                                                                    70                                                                                                                                                                        259                                           310                             343
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FFO)

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  ITB6_HUMAN | P18564
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  TGFB1_HUMAN | P01137
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITAV_HUMAN | P06756: 1jv2 1l5g 1m1x 1u8c 3ije 4g1e 4g1m 4mmx 4mmy 4mmz 4o02 4um8 4um9 5ffg 5nem 5ner 5net 5neu
        ITB6_HUMAN | P18564: 1lh9 4um8 4um9 5ffg 5nem 5ner 5net 5neu
        TGFB1_HUMAN | P01137: 1kla 1klc 1kld 3kfd 4kv5

(-) Related Entries Specified in the PDB File

5ffg