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(-) Description

Title :  CRYSTAL STRUCTURE OF ALPHA V BETA 6
 
Authors :  X. Dong, T. A. Springer
Date :  15 May 14  (Deposition) - 12 Nov 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Immune System, Cell Surface Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Dong, N. E. Hudson, C. Lu, T. A. Springer
Structural Determinants Of Integrin Beta-Subunit Specificity For Latent Tgf-Beta
Nat. Struct. Mol. Biol. V. 21 1091 2014
PubMed-ID: 25383667  |  Reference-DOI: 10.1038/NSMB.2905

(-) Compounds

Molecule 1 - INTEGRIN ALPHA-V
    Chains: A, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNT I- CELL
    Expression System Common: HUMAN
    Expression System Plasmid: PCDNA 3.1 AND ET10
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: HEADPIECE, RESIDUES 31-625
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: VITRONECTIN RECEPTOR SUBUNIT ALPHA, INTEGRIN ALPHA V
 
Molecule 2 - INTEGRIN BETA-6
    Chains: B, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNT I- CELL
    Expression System Common: HUMAN
    Expression System Plasmid: PCDNA 3.1 AND ET10
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INTEGRIN BETA 6

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 77)

Asymmetric Unit (9, 77)
No.NameCountTypeFull Name
1BMA10Ligand/IonBETA-D-MANNOSE
2CA10Ligand/IonCALCIUM ION
3CAC2Ligand/IonCACODYLATE ION
4CL3Ligand/IonCHLORIDE ION
5MAN17Ligand/IonALPHA-D-MANNOSE
6MG2Ligand/IonMAGNESIUM ION
7NAG29Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NI1Ligand/IonNICKEL (II) ION
9SO43Ligand/IonSULFATE ION
Biological Unit 1 (5, 30)
No.NameCountTypeFull Name
1BMA5Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3CAC1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5MAN8Ligand/IonALPHA-D-MANNOSE
6MG-1Ligand/IonMAGNESIUM ION
7NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NI-1Ligand/IonNICKEL (II) ION
9SO43Ligand/IonSULFATE ION
Biological Unit 2 (4, 31)
No.NameCountTypeFull Name
1BMA5Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3CAC1Ligand/IonCACODYLATE ION
4CL-1Ligand/IonCHLORIDE ION
5MAN9Ligand/IonALPHA-D-MANNOSE
6MG-1Ligand/IonMAGNESIUM ION
7NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NI-1Ligand/IonNICKEL (II) ION
9SO4-1Ligand/IonSULFATE ION

(-) Sites  (37, 37)

Asymmetric Unit (37, 37)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238 , HOH A:4027BINDING SITE FOR RESIDUE CA A2001
02AC2SOFTWAREASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292 , HOH A:4034BINDING SITE FOR RESIDUE CA A2002
03AC3SOFTWAREASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357BINDING SITE FOR RESIDUE CA A2003
04AC4SOFTWAREASP A:413 , ASP A:415 , ASN A:417 , TYR A:419 , ASP A:421BINDING SITE FOR RESIDUE CA A2004
05AC5SOFTWAREASP B:123 , SER B:125 , GLU B:223 , ASP B:254BINDING SITE FOR RESIDUE MG B2001
06AC6SOFTWARESER B:127 , ASP B:130 , ASP B:131 , LYS B:338BINDING SITE FOR RESIDUE CA B2003
07AC7SOFTWAREASP C:415 , ASN C:417 , TYR C:419 , ASP C:421 , HOH C:4029BINDING SITE FOR RESIDUE CA C2001
08AC8SOFTWAREASP C:349 , ASP C:351 , ASP C:353 , PHE C:355 , ASP C:357BINDING SITE FOR RESIDUE CA C2002
09AC9SOFTWAREASP C:230 , ASN C:232 , ASP C:234 , ILE C:236 , ASP C:238 , ASP C:257 , HOH C:4010BINDING SITE FOR RESIDUE CA C2003
10BC1SOFTWAREASP C:284 , ASN C:286 , ASP C:288 , TYR C:290 , ASP C:292BINDING SITE FOR RESIDUE CA C2004
11BC2SOFTWAREASP D:123 , SER D:125 , GLU D:223 , ASP D:254 , HOH D:4003BINDING SITE FOR RESIDUE MG D2001
12BC3SOFTWARESER D:127 , ASP D:130 , ASP D:131 , LYS D:338BINDING SITE FOR RESIDUE CA D2003
13BC4SOFTWARESER C:528 , LEU C:532BINDING SITE FOR RESIDUE CL C1595
14BC5SOFTWAREASN A:77 , SER A:90BINDING SITE FOR RESIDUE CL A1595
15BC6SOFTWAREASN C:77 , SER C:90BINDING SITE FOR RESIDUE CL C1596
16BC7SOFTWAREPRO A:488 , ARG A:489BINDING SITE FOR RESIDUE SO4 A1596
17BC8SOFTWAREPHE A:337 , LYS A:369 , HOH A:4037 , PRO B:271BINDING SITE FOR RESIDUE SO4 A1597
18BC9SOFTWAREGLY A:418 , GLY A:485BINDING SITE FOR RESIDUE SO4 A1598
19CC1SOFTWAREHIS A:591 , HIS C:591BINDING SITE FOR RESIDUE NI A1599
20CC2SOFTWAREPRO D:89 , LEU D:92 , LEU D:104 , GLN D:105BINDING SITE FOR RESIDUE CAC D1442
21CC3SOFTWAREVAL B:65 , THR B:103 , LEU B:104 , GLN B:105BINDING SITE FOR RESIDUE CAC B1442
22CC4SOFTWAREGLU A:15 , GLY A:16 , SER A:17 , LYS A:42 , ASN A:44 , GLU A:52BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3044 THROUGH MAN A3047 BOUND TO ASN A 44
23CC5SOFTWAREASP A:257 , LYS A:259 , ASN A:260 , TYR A:265 , GLY A:324BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3260 THROUGH MAN A3264 BOUND TO ASN A 260
24CC6SOFTWAREARG A:211 , GLN A:214 , PHE A:217 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3266 THROUGH MAN A3271 BOUND TO ASN A 266
25CC7SOFTWAREASN A:458 , THR A:460 , CYS A:461 , CYS A:472 , PHE A:473 , ASN A:474 , MAN C:3461BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3458 THROUGH BMA A3460 BOUND TO ASN A 458
26CC8SOFTWAREASN A:524 , ASP A:564 , HOH A:4065 , GLU C:10 , SER C:12 , ARG C:65 , ARG C:431 , HOH C:4027BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3524 THROUGH MAN A3528 BOUND TO ASN A 524
27CC9SOFTWAREPRO A:583 , ASN A:585BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3585 THROUGH NAG A3586 BOUND TO ASN A 585
28DC1SOFTWAREASN B:243BINDING SITE FOR MONO-SACCHARIDE NAG B3243 BOUND TO ASN B 243
29DC2SOFTWAREGLU C:15 , GLY C:16 , SER C:17 , LYS C:42 , ASN C:44BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3044 THROUGH BMA C3046 BOUND TO ASN C 44
30DC3SOFTWAREASP C:257 , LYS C:259 , ASN C:260BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3260 THROUGH NAG C3261 BOUND TO ASN C 260
31DC4SOFTWAREARG C:211 , GLN C:214 , PHE C:217 , TYR C:254 , SER C:263 , LEU C:264 , ASN C:266BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3266 THROUGH MAN C3271 BOUND TO ASN C 266
32DC5SOFTWAREGLU A:448 , TYR A:450 , NAG A:3459 , BMA A:3460 , ASN C:458 , THR C:460 , CYS C:472 , ASN C:474 , HOH C:4035BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3458 THROUGH MAN C3461 BOUND TO ASN C 458
33DC6SOFTWAREGLU A:10 , SER A:12 , GLY A:13 , GLU A:15 , LEU A:57 , ARG A:65 , ARG A:66 , CYS A:67 , ARG A:398 , ARG A:431 , ASN C:492 , ASN C:524BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3524 THROUGH MAN C3530 BOUND TO ASN C 524
34DC7SOFTWAREGLU C:560 , PRO C:583 , ASN C:585BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3585 THROUGH NAG C3586 BOUND TO ASN C 585
35DC8SOFTWAREASN D:80 , SER D:82 , HOH D:4021 , HOH D:4022BINDING SITE FOR MONO-SACCHARIDE NAG D3080 BOUND TO ASN D 80
36DC9SOFTWAREASN D:243 , HOH D:4013BINDING SITE FOR MONO-SACCHARIDE NAG D3243 BOUND TO ASN D 243
37EC1SOFTWAREASN B:212 , LYS B:214 , SER C:305 , LYS C:330 , LEU C:331 , ASN C:332 , ASN D:370 , PRO D:407 , HOH D:4023BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D3370 THROUGH MAN D3373 BOUND TO ASN D 370

(-) SS Bonds  (28, 28)

Asymmetric Unit
No.Residues
1A:59 -A:67
2A:108 -A:128
3A:142 -A:155
4A:400 -B:270
5A:461 -A:472
6A:478 -A:535
7B:6 -B:24
8B:14 -B:437
9B:17 -B:42
10B:27 -B:53
11B:180 -B:187
12B:235 -B:276
13B:377 -B:389
14B:409 -B:435
15C:59 -C:67
16C:108 -C:128
17C:142 -C:155
18C:400 -D:270
19C:461 -C:472
20C:478 -C:535
21D:6 -D:24
22D:14 -D:437
23D:17 -D:42
24D:27 -D:53
25D:180 -D:187
26D:235 -D:276
27D:377 -D:389
28D:409 -D:435

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:450 -Pro A:451
2Ala B:88 -Pro B:89
3Ser B:166 -Pro B:167
4Ile B:183 -Pro B:184
5Tyr C:450 -Pro C:451
6Ala D:88 -Pro D:89
7Ser D:166 -Pro D:167
8Ile D:183 -Pro D:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UM8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UM8)

(-) Exons   (0, 0)

(no "Exon" information available for 4UM8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:591
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..........eeee........eeeeee..............eeeeee......eee.........eee..ee.ee.........eeee..eeeeee...ee............eeeee....eeee....................eeee....eeeeee.hhhhhh.eeeeeehhhhhhh.............ee....hhhhh.......eeee........eeeeee.hhhhhh.eeeee......eeeeee...........eee..........eeeee...eee.....eee..eeeeeee.....eeeeeee...........eeeee........eeeeee...hhhhh.eeeee............eeee...............eeeee........eeeeeehhh.eeeee....eeee..eeeee..ee.................eeeeeeee.eee......eeeeeeeeee........eee......eeeeeeeee.....eeeeeeeee.hhhhh......eeeeeeeee.............ee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4um8 A   1 FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSCPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILL 594
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  ||   513       523       533       543       553       563       573       583       593 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                503|                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 507                                                                                       


Chain B from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.......ee....hhhhhhhhh.....ee....eeeeee..........hhhhh..ee..eeeeee....eeeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee...........hhhhhhh..............eeeeeeee.hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.....eeeeeeee.....hhhhhhh............................hhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhh.....eeee......hhhhhhhhhhhhhh..eeeeee......eeeeeeee...eeee...ee........eeeeeeee........eeeeeee......eeeeeee...hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4um8 B   5 GCALGGTCEDCLLIGPQCAWCARCDTPANLLAKGCQLNFIENPVSQVEILKNKPLSVGRQKNSSDIVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTAICNNGTLFQHQKKCSHMKVGDTASFSVTVNIPHCERRSRHIIIKPVGLGDALELLVSPECNCDCQK 441
                                 || 16        26 ||     48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438   
                                10|             28|                                                                                                                                                                                                                                                                                                                                                                                                                
                                 13              41                                                                                                                                                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:588
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeee..........eeee......eeeeee..............eeeeee......eee.........eee..ee.ee.........eeee..eeeeee...ee............eeeeee..eeeee....................eeee....eeeeee.hhhhhh.eeeeeehhhhhhh.............ee....hhhhh.......eeee........eeeeee.hhhhhh.eeeee......eeeeee...........eeee........eeeeee...eee.....eee..eeeeeee.....eeeeeee...........eeeee........eeeeee...hhhhh.eeeee............eeee...............eeeee........eeeeeehhh.eeeee....eeee..eeeee..ee.................eeeeeeee.eee......eeeeeeeeee.........eee......eeeeeeeee.....eeeeeeeee.hhhhh......eeeeeeeee...........ee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4um8 C   1 FNLDVDSPAEYSGPEGSYFGFAVDFFVPSSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSCPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTATTGLQPILNQFTPANISRQAHILL 594
                                    10        20        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502||     514       524       534       544       554       564   ||  576       586        
                                                       29|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    503|                                                           568|                       
                                                        32                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     506                                                            571                       


Chain D from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh.......ee...........ee....eeeeee..........hhhhh..ee..eeeeee....eeeeeeee.......eeeeeeee....hhhhhhhhh.hhhhhhhhhhhhh..eeeeeeee...........hhhhhhh..............eeeeeeee.hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.....eeeeeeee.....hhhhhhhhh..........................hhhhhhhhhhhh.eeeeeee...hhhhhhhhhh.....eeee......hhhhhhhhhhhhhh..eeeeee......eeeeeee......ee...ee........eeeeeeee........eeeeeee......eeeeeee...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4um8 D   5 GCALTCEDCLLIGPQCAWCARCDTPCQLNFIENPVSQVEILKNKPLSVGRQKNSSDIVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTAICNNGTLFQHQKKCSHMKVGDTASFSVTVNIPHCERRSRHIIIKPVGLGDALELLVSPECNCDCQK 441
                               ||   18        28|   ||  57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437    
                               8|             28|  45|                                                                                                                                                                                                                                                                                                                                                                                                    
                               13              41   53
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UM8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UM8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UM8)

(-) Gene Ontology  (76, 89)

Asymmetric Unit(hide GO term definitions)

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        ITAV_HUMAN | P06756: 1jv2 1l5g 1m1x 1u8c 3ije 4g1e 4g1m 4mmx 4mmy 4mmz 4o02 4um9 5ffg 5ffo 5nem 5ner 5net 5neu
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(-) Related Entries Specified in the PDB File

4um9 CRYSTAL STRUCTURE OF ALPHA V BETA 6 WITH PEPTIDE