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Asym. Unit
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Asym.Unit (1.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
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(1)
Title
:
INTEGRIN ALPHA V BETA 6 IN COMPLEX WITH PRO-TGF-BETA
Authors
:
X. Dong, B. Zhao, T. A. Springer
Date
:
18 Dec 15 (Deposition) - 25 Jan 17 (Release) - 15 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.49
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Integrin, Tgf-Beta, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Dong, B. Zhao, R. E. Iacob, J. Zhu, A. C. Koksal, C. Lu, J. R. Engen, T. A. Springer
Force Interacts With Macromolecular Structure In Activation Of Tgf-Beta.
Nature V. 542 55 2017
[
close entry info
]
Hetero Components
(5, 80)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
4e: MANGANESE (II) ION (MNe)
4f: MANGANESE (II) ION (MNf)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
5af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
12
Ligand/Ion
BETA-D-MANNOSE
2
CA
8
Ligand/Ion
CALCIUM ION
3
MAN
22
Ligand/Ion
ALPHA-D-MANNOSE
4
MN
6
Ligand/Ion
MANGANESE (II) ION
5
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292
binding site for residue CA A 2001
02
AC2
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357
binding site for residue CA A 2002
03
AC3
SOFTWARE
ASP A:414 , ASP A:416 , ASN A:418 , TYR A:420 , ASP A:422
binding site for residue CA A 2003
04
AC4
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238
binding site for residue CA A 2004
05
AC5
SOFTWARE
SER B:127 , ASP B:130 , ASP B:131 , ASP B:254 , HOH B:2103
binding site for residue MN B 2001
06
AC6
SOFTWARE
SER B:125 , SER B:127 , GLU B:223 , HOH B:2101 , HOH B:2102 , ASP D:217
binding site for residue MN B 2002
07
AC7
SOFTWARE
GLU B:162 , ASN B:218 , ASP B:220 , PRO B:222 , GLU B:223
binding site for residue MN B 2003
08
AC8
SOFTWARE
ASP E:284 , ASN E:286 , ASP E:288 , TYR E:290 , ASP E:292
binding site for residue CA E 2001
09
AC9
SOFTWARE
ASP E:349 , ASP E:351 , ASP E:353 , PHE E:355 , ASP E:357
binding site for residue CA E 2002
10
AD1
SOFTWARE
ASP E:414 , ASP E:416 , ASN E:418 , TYR E:420 , ASP E:422
binding site for residue CA E 2003
11
AD2
SOFTWARE
ASP E:230 , ASN E:232 , ASP E:234 , ILE E:236 , ASP E:238 , ASP E:257
binding site for residue CA E 2004
12
AD3
SOFTWARE
SER F:127 , ASP F:130 , ASP F:131 , ASP F:254
binding site for residue MN F 2001
13
AD4
SOFTWARE
SER F:125 , SER F:127 , GLU F:223 , HOH F:2101 , HOH F:2102 , ASP H:217
binding site for residue MN F 2002
14
AD5
SOFTWARE
GLU F:162 , ASN F:218 , ASP F:220 , PRO F:222 , GLU F:223
binding site for residue MN F 2003
15
AD6
SOFTWARE
GLU A:15 , ASN A:44 , GLU A:52
binding site for Poly-Saccharide residues NAG A 2005 through BMA A 2007 bound to ASN A 44
16
AD7
SOFTWARE
PHE A:231 , ASN A:232 , ASP A:257 , ASN A:260 , TYR A:265 , ALA A:322 , ARG E:550 , LYS H:134 , VAL H:135 , PRO H:160 , ASP H:162
binding site for Poly-Saccharide residues NAG A 2008 through MAN A 2013 bound to ASN A 260
17
AD8
SOFTWARE
THR A:212 , ALA A:213 , GLN A:214 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266 , LYS E:82
binding site for Poly-Saccharide residues NAG A 2014 through MAN A 2020 bound to ASN A 266
18
AD9
SOFTWARE
PRO A:452 , ASN A:459 , THR A:461 , CYS A:473 , ASN A:475 , GLU A:538
binding site for Poly-Saccharide residues NAG A 2021 through MAN A 2024 bound to ASN A 459
19
AE1
SOFTWARE
GLN A:495 , ASN A:525
binding site for Mono-Saccharide NAG A 2025 bound to ASN A 525
20
AE2
SOFTWARE
LYS A:502 , PHE A:559 , ALA A:585 , ASN A:586
binding site for Poly-Saccharide residues NAG A 2026 through NAG A 2027 bound to ASN A 586
21
AE3
SOFTWARE
ASN B:243
binding site for Mono-Saccharide NAG B 2004 bound to ASN B 243
22
AE4
SOFTWARE
GLU C:46 , ASN C:53 , ARG C:56
binding site for Poly-Saccharide residues NAG C 401 through MAN C 404 bound to ASN C 53
23
AE5
SOFTWARE
ALA B:177 , PHE B:186 , ASN D:53 , ARG D:56
binding site for Poly-Saccharide residues NAG D 401 through MAN D 404 bound to ASN D 53
24
AE6
SOFTWARE
GLU E:15 , GLY E:16 , ASN E:44 , GLU E:52
binding site for Poly-Saccharide residues NAG E 2005 through BMA E 2007 bound to ASN E 44
25
AE7
SOFTWARE
ARG A:550 , LYS D:134 , VAL D:135 , ASP D:162 , PHE E:231 , ASN E:232 , ASP E:257 , LYS E:259 , ASN E:260 , TYR E:265 , ALA E:322
binding site for Poly-Saccharide residues NAG E 2008 through MAN E 2013 bound to ASN E 260
26
AE8
SOFTWARE
LYS A:82 , THR E:212 , ALA E:213 , GLN E:214 , TYR E:254 , TYR E:256 , SER E:263 , LEU E:264 , ASN E:266
binding site for Poly-Saccharide residues NAG E 2014 through MAN E 2020 bound to ASN E 266
27
AE9
SOFTWARE
ILE E:454 , ASN E:459 , THR E:461 , CYS E:473 , ASN E:475 , GLU E:538
binding site for Poly-Saccharide residues NAG E 2021 through MAN E 2024 bound to ASN E 459
28
AF1
SOFTWARE
ASN E:525
binding site for Mono-Saccharide NAG E 2025 bound to ASN E 525
29
AF2
SOFTWARE
LYS E:502 , PHE E:559 , ALA E:585 , ASN E:586
binding site for Poly-Saccharide residues NAG E 2026 through NAG E 2027 bound to ASN E 586
30
AF3
SOFTWARE
ASN F:243
binding site for Mono-Saccharide NAG F 2004 bound to ASN F 243
31
AF4
SOFTWARE
ASN G:53 , ARG G:56
binding site for Poly-Saccharide residues NAG G 401 through MAN G 404 bound to ASN G 53
32
AF5
SOFTWARE
PHE F:186 , ASN H:53 , ARG H:56
binding site for Poly-Saccharide residues NAG H 401 through MAN H 406 bound to ASN H 53
[
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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