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(-) Description

Title :  CRYSTAL STRUCTURE OF CK2 WITH COMPOUND 7B
 
Authors :  A. D. Ferguson
Date :  23 Dec 15  (Deposition) - 10 Feb 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Inhibitor, Ck2, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. E. Dowling, M. Alimzhanov, L. Bao, C. Chuaqui, C. R. Denz, E. Jenkins N. A. Larsen, P. D. Lyne, T. Pontz, Q. Ye, G. A. Holdgate, L. Snow, N. O'Connell, A. D. Ferguson
Potent And Selective Ck2 Kinase Inhibitors With Effects On Wnt Pathway Signaling In Vivo.
Acs Med. Chem. Lett. V. 7 300 2016
PubMed-ID: 26985319  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00452

(-) Compounds

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 1-333
    GeneCSNK2A1, CK2A1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCK II ALPHA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric/Biological Unit (3, 21)
No.NameCountTypeFull Name
15Y41Ligand/Ion~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]-2-[2-(DIMETHYLAMINO)ETHYL-METHYL-AMINO]PHENYL]ETHANAMIDE
2CL2Ligand/IonCHLORIDE ION
3EDO18Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:48 , LYS A:49 , TYR A:50 , SER A:51 , EDO A:416 , HOH A:635binding site for residue CL A 401
02AC2SOFTWAREHIS A:148 , ALA A:315 , HOH A:555binding site for residue CL A 402
03AC3SOFTWAREASP A:156 , LYS A:158 , SER A:194 , 5Y4 A:421 , HOH A:577binding site for residue EDO A 403
04AC4SOFTWAREARG A:155 , GLU A:180 , GLN A:186 , TYR A:188 , ASN A:189 , ARG A:275 , EDO A:412 , HOH A:551binding site for residue EDO A 404
05AC5SOFTWAREARG A:306 , TYR A:307 , ASP A:308 , HOH A:525 , HOH A:571binding site for residue EDO A 405
06AC6SOFTWARELYS A:158 , HIS A:160 , SER A:194 , PHE A:197 , HOH A:654binding site for residue EDO A 406
07AC7SOFTWAREARG A:21 , TYR A:131 , ASP A:132 , PHE A:135 , ARG A:169binding site for residue EDO A 407
08AC8SOFTWAREASP A:37 , TYR A:39 , GLN A:40 , HOH A:570binding site for residue EDO A 408
09AC9SOFTWARELEU A:203 , ASN A:238 , GLU A:252 , ASP A:256binding site for residue EDO A 409
10AD1SOFTWAREPHE A:232 , VAL A:248 , HOH A:515 , HOH A:584binding site for residue EDO A 410
11AD2SOFTWAREPRO A:6 , GLU A:114 , HOH A:524binding site for residue EDO A 411
12AD3SOFTWAREARG A:80 , ARG A:155 , LEU A:178 , ASN A:189 , EDO A:404binding site for residue EDO A 412
13AD4SOFTWAREASN A:16 , THR A:17 , TRP A:24 , GLU A:167 , HIS A:183 , HOH A:601binding site for residue EDO A 413
14AD5SOFTWAREASP A:25 , TYR A:26 , GLU A:27binding site for residue EDO A 414
15AD6SOFTWAREASN A:118 , ASP A:120 , PHE A:121 , PRO A:159 , HIS A:160 , VAL A:162 , MET A:163binding site for residue EDO A 415
16AD7SOFTWARETYR A:50 , LYS A:77 , ASP A:175 , GLY A:177 , LEU A:178 , CL A:401 , 5Y4 A:421 , HOH A:504 , HOH A:577binding site for residue EDO A 416
17AD8SOFTWAREGLN A:36 , ALA A:110 , GLU A:320 , HOH A:533 , HOH A:570binding site for residue EDO A 417
18AD9SOFTWAREPHE A:54 , LYS A:303 , GLU A:317 , HIS A:321 , HOH A:529binding site for residue EDO A 418
19AE1SOFTWAREGLY A:34 , ASN A:35 , GLN A:36 , VAL A:101 , LYS A:102 , HOH A:538binding site for residue EDO A 419
20AE2SOFTWAREARG A:10 , THR A:13 , SER A:287binding site for residue EDO A 420
21AE3SOFTWARESER A:51 , VAL A:53 , VAL A:66 , LYS A:68 , ILE A:95 , PHE A:113 , GLU A:114 , VAL A:116 , ASN A:161 , MET A:163 , ASP A:175 , EDO A:403 , EDO A:416 , HOH A:522 , HOH A:619binding site for residue 5Y4 A 421

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H8G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:230 -Pro A:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H8G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H8G)

(-) Exons   (0, 0)

(no "Exon" information available for 5H8G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5h8g A   3 GPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVV 328
                                    12        22        32        42        52        62        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324    
                                                                                               71|                                                                                                                                                                                                                                                              
                                                                                                74                                                                                                                                                                                                                                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H8G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H8G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H8G)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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    Glu A:230 - Pro A:231   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSK21_HUMAN | P684001jwh 1na7 1pjk 2pvr 2zjw 3amy 3at2 3at3 3at4 3axw 3bqc 3c13 3fwq 3h30 3juh 3mb6 3mb7 3nga 3nsz 3owj 3owk 3owl 3pe1 3pe2 3pe4 3q04 3q9w 3q9x 3q9y 3q9z 3qa0 3r0t 3rps 3tax 3u4u 3u87 3u9c 3w8l 3war 3wik 3wil 3wow 4dgl 4fbx 4grb 4gub 4gyw 4gyy 4gz3 4ib5 4kwp 4md7 4md8 4md9 4nh1 4rll 4ub7 4uba 5b0x 5clp 5cqu 5cqw 5cs6 5csh 5csp 5csv 5ct0 5ctp 5cu0 5cu2 5cu3 5cu4 5cu6 5cvf 5cvg 5cvh 5cx9 5h8b 5h8e 5hgv 5m44 5m4c 5m4f 5m4i 5mmf 5mmr 5mo5 5mo6 5mo7 5mo8 5mod 5moe 5moh 5mot 5mov 5mow 5mp8 5mpj 5n1v 5nqc

(-) Related Entries Specified in the PDB File

5h8b 5h8e