PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5H8G
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (119 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CK2 WITH COMPOUND 7B
Authors
:
A. D. Ferguson
Date
:
23 Dec 15 (Deposition) - 10 Feb 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinase, Inhibitor, Ck2, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Dowling, M. Alimzhanov, L. Bao, C. Chuaqui, C. R. Denz, E. Jenkins N. A. Larsen, P. D. Lyne, T. Pontz, Q. Ye, G. A. Holdgate, L. Snow, N. O'Connell, A. D. Ferguson
Potent And Selective Ck2 Kinase Inhibitors With Effects On Wnt Pathway Signaling In Vivo.
Acs Med. Chem. Lett. V. 7 300 2016
[
close entry info
]
Hetero Components
(3, 21)
Info
All Hetero Components
1a: ~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAM... (5Y4a)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5Y4
1
Ligand/Ion
~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]-2-[2-(DIMETHYLAMINO)ETHYL-METHYL-AMINO]PHENYL]ETHANAMIDE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:48 , LYS A:49 , TYR A:50 , SER A:51 , EDO A:416 , HOH A:635
binding site for residue CL A 401
02
AC2
SOFTWARE
HIS A:148 , ALA A:315 , HOH A:555
binding site for residue CL A 402
03
AC3
SOFTWARE
ASP A:156 , LYS A:158 , SER A:194 , 5Y4 A:421 , HOH A:577
binding site for residue EDO A 403
04
AC4
SOFTWARE
ARG A:155 , GLU A:180 , GLN A:186 , TYR A:188 , ASN A:189 , ARG A:275 , EDO A:412 , HOH A:551
binding site for residue EDO A 404
05
AC5
SOFTWARE
ARG A:306 , TYR A:307 , ASP A:308 , HOH A:525 , HOH A:571
binding site for residue EDO A 405
06
AC6
SOFTWARE
LYS A:158 , HIS A:160 , SER A:194 , PHE A:197 , HOH A:654
binding site for residue EDO A 406
07
AC7
SOFTWARE
ARG A:21 , TYR A:131 , ASP A:132 , PHE A:135 , ARG A:169
binding site for residue EDO A 407
08
AC8
SOFTWARE
ASP A:37 , TYR A:39 , GLN A:40 , HOH A:570
binding site for residue EDO A 408
09
AC9
SOFTWARE
LEU A:203 , ASN A:238 , GLU A:252 , ASP A:256
binding site for residue EDO A 409
10
AD1
SOFTWARE
PHE A:232 , VAL A:248 , HOH A:515 , HOH A:584
binding site for residue EDO A 410
11
AD2
SOFTWARE
PRO A:6 , GLU A:114 , HOH A:524
binding site for residue EDO A 411
12
AD3
SOFTWARE
ARG A:80 , ARG A:155 , LEU A:178 , ASN A:189 , EDO A:404
binding site for residue EDO A 412
13
AD4
SOFTWARE
ASN A:16 , THR A:17 , TRP A:24 , GLU A:167 , HIS A:183 , HOH A:601
binding site for residue EDO A 413
14
AD5
SOFTWARE
ASP A:25 , TYR A:26 , GLU A:27
binding site for residue EDO A 414
15
AD6
SOFTWARE
ASN A:118 , ASP A:120 , PHE A:121 , PRO A:159 , HIS A:160 , VAL A:162 , MET A:163
binding site for residue EDO A 415
16
AD7
SOFTWARE
TYR A:50 , LYS A:77 , ASP A:175 , GLY A:177 , LEU A:178 , CL A:401 , 5Y4 A:421 , HOH A:504 , HOH A:577
binding site for residue EDO A 416
17
AD8
SOFTWARE
GLN A:36 , ALA A:110 , GLU A:320 , HOH A:533 , HOH A:570
binding site for residue EDO A 417
18
AD9
SOFTWARE
PHE A:54 , LYS A:303 , GLU A:317 , HIS A:321 , HOH A:529
binding site for residue EDO A 418
19
AE1
SOFTWARE
GLY A:34 , ASN A:35 , GLN A:36 , VAL A:101 , LYS A:102 , HOH A:538
binding site for residue EDO A 419
20
AE2
SOFTWARE
ARG A:10 , THR A:13 , SER A:287
binding site for residue EDO A 420
21
AE3
SOFTWARE
SER A:51 , VAL A:53 , VAL A:66 , LYS A:68 , ILE A:95 , PHE A:113 , GLU A:114 , VAL A:116 , ASN A:161 , MET A:163 , ASP A:175 , EDO A:403 , EDO A:416 , HOH A:522 , HOH A:619
binding site for residue 5Y4 A 421
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5H8G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help