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(-) Description

Title :  MONOCLINIC COMPLEX STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT WITH A BENZOTRIAZOLE-BASED INHIBITOR GENERATED BY CLICK-CHEMISTRY
 
Authors :  K. Niefind, A. Schnitzler, R. Swider, M. Maslyk, A. Ramos
Date :  22 Jul 15  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Atp-Competitive Inhibitor, Protein Kinase Ck2, Casein Kinase 2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Swider, M. Maslyk, J. M. Zapico, C. Coderch, R. Panchuk, N. Skorokhyd, A. Schnitzler, K. Niefind, B. De Pascual-Teresa, A. Ramos
Synthesis, Biological Activity And Structural Study Of New Benzotriazole-Based Protein Kinase Ck2 Inhibitors
Rsc Adv V. 5 72482 2015
PubMed: search  |  Reference-DOI: 10.1039/C5RA12114K
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PT7-7
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CSNK2A1, CK2A1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CK II ALPHA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2JRJ1Ligand/Ion4-[4-[2-[4,5,6,7-TETRAKIS(BROMANYL)BENZOTRIAZOL-2-YL]ETHYL]-1,2,3-TRIAZOL-1-YL]BUTAN-1-AMINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:45 , GLY A:48 , LYS A:49 , TYR A:50 , SER A:51 , VAL A:53 , VAL A:66 , PHE A:113 , GLU A:114 , VAL A:116 , MET A:163 , ILE A:174 , ASP A:175 , HOH A:587binding site for residue JRJ A 401
2AC2SOFTWARELYS A:77 , ARG A:80 , ARG A:155 , ASN A:189 , HOH A:531binding site for residue SO4 A 402
3AC3SOFTWAREARG A:191 , LYS A:198 , ASN A:238 , HOH A:526binding site for residue SO4 A 403
4AC4SOFTWAREARG A:278 , ARG A:306 , TYR A:307 , ASP A:308 , HOH A:504binding site for residue GOL A 404
5AC5SOFTWAREGLN A:36 , TYR A:39 , ILE A:69 , ASP A:103 , ARG A:280 , HOH A:577binding site for residue GOL A 405
6AC6SOFTWAREHIS A:236 , ASP A:237binding site for residue GOL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CQU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:230 -Pro A:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CQU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CQU)

(-) Exons   (0, 0)

(no "Exon" information available for 5CQU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhh........eeeeee......eeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.......hhhhhh...hhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cqu A   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CQU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CQU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CQU)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSK21_HUMAN | P68400: 1jwh 1na7 1pjk 2pvr 2zjw 3amy 3at2 3at3 3at4 3axw 3bqc 3c13 3fwq 3h30 3juh 3mb6 3mb7 3nga 3nsz 3owj 3owk 3owl 3pe1 3pe2 3pe4 3q04 3q9w 3q9x 3q9y 3q9z 3qa0 3r0t 3rps 3tax 3u4u 3u87 3u9c 3w8l 3war 3wik 3wil 3wow 4dgl 4fbx 4grb 4gub 4gyw 4gyy 4gz3 4ib5 4kwp 4md7 4md8 4md9 4nh1 4rll 4ub7 4uba 5b0x 5clp 5cqw 5cs6 5csh 5csp 5csv 5ct0 5ctp 5cu0 5cu2 5cu3 5cu4 5cu6 5cvf 5cvg 5cvh 5cx9 5h8b 5h8e 5h8g 5hgv 5m44 5m4c 5m4f 5m4i 5mmf 5mmr 5mo5 5mo6 5mo7 5mo8 5mod 5moe 5moh 5mot 5mov 5mow 5mp8 5mpj 5n1v 5nqc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CQU)