5N1V - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE PROTEIN KINASE CK2 CATALYTIC SUBUNIT IN COMPLEX WITH PYRAZOLO-PYRIMIDINE MACROCYCLIC LIGAND

Authors :   G. Robb, A. Ferguson, D. Hargreaves

Date :   06 Feb 17 (Deposition) - 17 May 17 (Release) - 07 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.52

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Mccoull, R. D. Abrams, E. Anderson, K. Blades, P. Barton, M. Box, J. Burgess, K. Byth, Q. Cao, C. Chuaqui, R. J. Carbajo, T. Cheung, E. Code, A. D. Ferguson, S. Fillery, N. O. Fuller, E. Gangl, N. Gao, M. Grist, D. Hargreaves, M. R. Howard, J. Hu, P. D. Kemmitt, J. E. Nelson N. O'Connell, D. B. Prince, P. Raubo, P. B. Rawlins, G. R. Robb, J. Shi, M. J. Waring, D. Whittaker, M. Wylot, X. Zhu
Discovery Of Pyrazolo[1, 5-A]Pyrimidine B-Cell Lymphoma 6 (Bcl6) Binders And Optimization To High Affinity Macrocycli Inhibitors.
J. Med. Chem. V. 60 4386 2017
PubMed-ID: 28485934 | Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00359

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	KOMAGATAELLA PASTORIS
	Expression System Taxid	:	4922
	Gene	:	CSNK2A1, CK2A1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CK II ALPHA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 25)

No.	Name	Count	Type	Full Name
1	8GQ	2	Ligand/Ion	PYRAZOLO-PYRIMIDINE MACROCYCLE
2	EDO	16	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 13)

No.	Name	Count	Type	Full Name
1	8GQ	1	Ligand/Ion	PYRAZOLO-PYRIMIDINE MACROCYCLE
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	8GQ	1	Ligand/Ion	PYRAZOLO-PYRIMIDINE MACROCYCLE
2	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:77 , ARG A:80 , ARG A:155 , ASN A:189 , HOH A:506	binding site for residue SO4 A 401
02	AC2	SOFTWARE	ARG A:191 , LYS A:198 , ASN A:238	binding site for residue SO4 A 402
03	AC3	SOFTWARE	TRP A:33 , LYS A:75 , LYS A:102 , SO4 A:405	binding site for residue SO4 A 403
04	AC4	SOFTWARE	ARG A:280 , GLU A:282 , ARG A:283	binding site for residue SO4 A 404
05	AC5	SOFTWARE	LYS A:75 , LYS A:102 , ARG A:107 , SO4 A:403 , LYS B:74	binding site for residue SO4 A 405
06	AC6	SOFTWARE	GLN A:36 , ALA A:110	binding site for residue EDO A 406
07	AC7	SOFTWARE	ASP A:25 , TYR A:26 , GLU A:27	binding site for residue EDO A 407
08	AC8	SOFTWARE	ASP A:299 , LYS A:303 , LEU B:298	binding site for residue EDO A 408
09	AC9	SOFTWARE	ALA A:9 , ARG A:10 , ASP A:210 , SER A:212 , HIS A:309 , GLN A:310 , ARG A:312 , HOH A:501 , HOH A:511	binding site for residue EDO A 409
10	AD1	SOFTWARE	VAL A:11 , HIS A:148 , THR A:314 , ALA A:315 , HOH A:501 , HOH A:505 , HOH A:511	binding site for residue EDO A 410
11	AD2	SOFTWARE	LYS A:75 , LYS B:74 , LYS B:75	binding site for residue EDO A 411
12	AD3	SOFTWARE	HIS A:276 , SER A:277 , LYS A:279	binding site for residue EDO A 412
13	AD4	SOFTWARE	VAL A:53 , VAL A:66 , PHE A:113 , GLU A:114 , VAL A:116 , ASN A:117 , ASN A:118 , HIS A:160 , ILE A:174 , ASP A:175 , HOH A:534	binding site for residue 8GQ A 413
14	AD5	SOFTWARE	LYS B:77 , ARG B:80 , ARG B:155 , ASN B:189 , HOH B:553	binding site for residue SO4 B 401
15	AD6	SOFTWARE	TRP B:33 , LYS B:102	binding site for residue SO4 B 402
16	AD7	SOFTWARE	ASP B:25 , TYR B:26 , GLU B:27	binding site for residue EDO B 403
17	AD8	SOFTWARE	ASP A:299 , ASP A:302 , TRP B:281 , GLU B:282	binding site for residue EDO B 404
18	AD9	SOFTWARE	HIS B:276 , SER B:277 , LYS B:279	binding site for residue EDO B 405
19	AE1	SOFTWARE	ARG B:191 , LYS B:198 , ASN B:238	binding site for residue EDO B 406
20	AE2	SOFTWARE	ARG B:8 , ALA B:9 , ARG B:10 , ASP B:210 , TYR B:211 , GLN B:310 , EDO B:409 , HOH B:521	binding site for residue EDO B 407
21	AE3	SOFTWARE	GLN B:36 , ALA B:110	binding site for residue EDO B 408
22	AE4	SOFTWARE	VAL B:11 , HIS B:148 , TYR B:211 , SER B:212 , THR B:314 , ALA B:315 , EDO B:407 , HOH B:507 , HOH B:529	binding site for residue EDO B 409
23	AE5	SOFTWARE	LYS B:229 , ARG B:244	binding site for residue EDO B 410
24	AE6	SOFTWARE	ARG A:47 , LYS B:75 , LYS B:102 , ARG B:107	binding site for residue EDO B 411
25	AE7	SOFTWARE	LEU B:45 , VAL B:53 , VAL B:66 , PHE B:113 , GLU B:114 , VAL B:116 , ASN B:117 , ASN B:118 , HIS B:160 , MET B:163 , ILE B:174 , ASP B:175 , HOH B:552	binding site for residue 8GQ B 412

(no "SS Bond" information available for 5N1V)

Asymmetric Unit

No.	Residues
1	Glu A:230	-	Pro A:231
2	Glu B:230	-	Pro B:231

(no "SAP(SNP)/Variant" information available for 5N1V)

(no "PROSITE Motif" information available for 5N1V)

(no "Exon" information available for 5N1V)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh....ee...eeeeeeeee...eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........hhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n1v A   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee.hhhhhee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n1v B   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5N1V)

(no "CATH Domain" information available for 5N1V)

(no "Pfam Domain" information available for 5N1V)

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	Cis Peptide Bonds
		Glu A:230 - Pro A:231	[ RasMol ]
		Glu B:230 - Pro B:231	[ RasMol ]

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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (3, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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