5CQW - JenaLib

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Title :   TETRAGONAL COMPLEX STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT WITH A BENZOTRIAZOLE-BASED INHIBITOR GENERATED BY CLICK-CHEMISTRY

Authors :   K. Niefind, A. Schnitzler, R. Swider, M. Maslyk, A. Ramos

Date :   22 Jul 15 (Deposition) - 09 Sep 15 (Release) - 09 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Atp-Competitive Inhibitor, Protein Kinase Ck2, Casein Kinase 2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Swider, M. Maslyk, J. M. Zapico, C. Coderch, R. Panchuk, N. Skorokhyd, A. Schnitzler, K. Niefind, B. De Pascual-Teresa, A. Ramos
Synthesis, Biological Activity And Structural Study Of New Benzotriazole-Based Protein Kinase Ck2 Inhibitors
Rsc Adv V. 5 72482 2015
PubMed: search | Reference-DOI: 10.1039/C5RA12114K
(for further references see the PDB file header)

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PT7-7
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CSNK2A1, CK2A1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CK II ALPHA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	JRJ	2	Ligand/Ion	4-[4-[2-[4,5,6,7-TETRAKIS(BROMANYL)BENZOTRIAZOL-2-YL]ETHYL]-1,2,3-TRIAZOL-1-YL]BUTAN-1-AMINE
4	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	JRJ	1	Ligand/Ion	4-[4-[2-[4,5,6,7-TETRAKIS(BROMANYL)BENZOTRIAZOL-2-YL]ETHYL]-1,2,3-TRIAZOL-1-YL]BUTAN-1-AMINE
4	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	JRJ	1	Ligand/Ion	4-[4-[2-[4,5,6,7-TETRAKIS(BROMANYL)BENZOTRIAZOL-2-YL]ETHYL]-1,2,3-TRIAZOL-1-YL]BUTAN-1-AMINE
4	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:45 , PHE A:113 , GLU A:114 , VAL A:116 , ASP A:120 , MET A:163 , ILE A:174 , ASP A:175	binding site for residue JRJ A 401
02	AC2	SOFTWARE	ARG A:80 , ARG A:155 , ASN A:189 , HOH A:506	binding site for residue SO4 A 402
03	AC3	SOFTWARE	HIS A:276 , SER A:277 , LYS A:279	binding site for residue SO4 A 403
04	AC4	SOFTWARE	LYS A:158 , HIS A:160 , SER A:194 , HOH A:538	binding site for residue SO4 A 404
05	AC5	SOFTWARE	TRP A:33 , HOH A:508 , GOL B:408	binding site for residue SO4 A 405
06	AC6	SOFTWARE	LYS A:74 , LYS A:75 , LYS B:75	binding site for residue SO4 A 406
07	AC7	SOFTWARE	VAL A:73 , LYS A:74 , LYS A:77 , LYS B:75 , ARG B:107	binding site for residue SO4 A 407
08	AC8	SOFTWARE	HIS A:148 , THR A:314 , ALA A:315 , HOH A:518	binding site for residue CL A 408
09	AC9	SOFTWARE	ASP A:299 , LYS A:303 , PRO B:295	binding site for residue GOL A 409
10	AD1	SOFTWARE	HIS A:234 , ARG A:244	binding site for residue GOL A 410
11	AD2	SOFTWARE	ARG A:107 , GLU B:114 , VAL B:116 , ASP B:120 , HIS B:160 , MET B:163 , ASP B:175	binding site for residue JRJ B 401
12	AD3	SOFTWARE	ARG B:80 , ARG B:155 , ASN B:189 , HOH B:513	binding site for residue SO4 B 402
13	AD4	SOFTWARE	ARG B:191 , LYS B:198 , ASN B:238 , HOH B:506	binding site for residue SO4 B 403
14	AD5	SOFTWARE	HIS B:276 , LYS B:279	binding site for residue SO4 B 404
15	AD6	SOFTWARE	LYS A:74 , TRP B:33 , LYS B:102	binding site for residue SO4 B 405
16	AD7	SOFTWARE	ARG B:244	binding site for residue SO4 B 406
17	AD8	SOFTWARE	HIS B:148 , THR B:314 , ALA B:315 , HOH B:516	binding site for residue CL B 407
18	AD9	SOFTWARE	LYS A:102 , ARG A:107 , SO4 A:405 , ARG B:47 , LYS B:76	binding site for residue GOL B 408
19	AE1	SOFTWARE	VAL A:293 , LEU A:298 , ASP B:299 , LYS B:303	binding site for residue GOL B 409

(no "SS Bond" information available for 5CQW)

Asymmetric Unit

No.	Residues
1	Glu A:230	-	Pro A:231
2	Glu B:230	-	Pro B:231

(no "SAP(SNP)/Variant" information available for 5CQW)

(no "PROSITE Motif" information available for 5CQW)

(no "Exon" information available for 5CQW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh....ee...eeeeeeeee...eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhh........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cqw A   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh....ee...eeeeeeeee...eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhh........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cqw B   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5CQW)

(no "CATH Domain" information available for 5CQW)

(no "Pfam Domain" information available for 5CQW)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Glu A:230 - Pro A:231	[ RasMol ]
		Glu B:230 - Pro B:231	[ RasMol ]

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	5cqw
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5cqu	THE SAME ENZYME/INHIBITOR COMPLEX IN A DIFFERENT CRYSTAL PACKING AND OBTAINED BY SOAKING RATHER THAN CO-CRYSTALLIZATION.

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Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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