5H8B - JenaLib

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Title :   CRYSTAL STRUCTURE OF CK2 WITH COMPOUND 2

Authors :   A. D. Ferguson

Date :   23 Dec 15 (Deposition) - 10 Feb 16 (Release) - 30 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.55

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Kinase, Inhibitor, Ck2, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Dowling, M. Alimzhanov, L. Bao, C. Chuaqui, C. R. Denz, E. Jenkins N. A. Larsen, P. D. Lyne, T. Pontz, Q. Ye, G. A. Holdgate, L. Snow, N. O'Connell, A. D. Ferguson
Potent And Selective Ck2 Kinase Inhibitors With Effects On Wnt Pathway Signaling In Vivo.
Acs Med. Chem. Lett. V. 7 300 2016
PubMed-ID: 26985319 | Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00452

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1-333
	Gene	:	CSNK2A1, CK2A1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CK II ALPHA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 37)

No.	Name	Count	Type	Full Name
1	5Y2	2	Ligand/Ion	~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]-2-METHYL-PHENYL]ETHANAMIDE
2	EDO	23	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 17)

No.	Name	Count	Type	Full Name
1	5Y2	1	Ligand/Ion	~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]-2-METHYL-PHENYL]ETHANAMIDE
2	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 20)

No.	Name	Count	Type	Full Name
1	5Y2	1	Ligand/Ion	~{N}-[5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]-2-METHYL-PHENYL]ETHANAMIDE
2	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (37, 37)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:77 , ARG A:80 , ARG A:155 , ASN A:189 , HOH A:514	binding site for residue SO4 A 401
02	AC2	SOFTWARE	ARG A:191 , LYS A:198 , ASN A:238	binding site for residue SO4 A 402
03	AC3	SOFTWARE	TRP A:33 , LYS A:75 , LYS A:102 , EDO A:414 , HOH A:570	binding site for residue SO4 A 403
04	AC4	SOFTWARE	LYS A:279 , ARG A:280 , GLU A:282 , ARG A:283 , HOH A:569	binding site for residue SO4 A 404
05	AC5	SOFTWARE	LYS A:75 , LYS A:102 , ARG A:107 , LYS B:74	binding site for residue SO4 A 405
06	AC6	SOFTWARE	LYS A:74 , LYS A:76 , LYS A:77 , ARG B:107 , SO4 B:404	binding site for residue SO4 A 406
07	AC7	SOFTWARE	GLU A:252 , SER A:277 , ARG A:278 , HOH A:501 , HOH A:505 , HOH A:525 , GLU B:252 , ARG B:275 , SER B:277 , ARG B:278	binding site for residue SO4 A 407
08	AC8	SOFTWARE	HIS A:276 , SER A:277 , LYS A:279	binding site for residue EDO A 408
09	AC9	SOFTWARE	GLN A:36 , TYR A:39	binding site for residue EDO A 409
10	AD1	SOFTWARE	TRP A:24 , ASP A:25 , TYR A:26 , GLU A:27	binding site for residue EDO A 410
11	AD2	SOFTWARE	ASP A:299 , LYS A:303 , VAL B:293 , SER B:294 , EDO B:407 , HOH B:586	binding site for residue EDO A 411
12	AD3	SOFTWARE	PRO A:6 , ARG A:8 , GLY A:185	binding site for residue EDO A 412
13	AD4	SOFTWARE	LYS A:75 , LYS B:74 , LYS B:75	binding site for residue EDO A 413
14	AD5	SOFTWARE	VAL A:31 , LYS A:75 , ILE A:78 , LYS A:79 , PRO A:109 , SO4 A:403	binding site for residue EDO A 414
15	AD6	SOFTWARE	ARG A:280 , TRP A:281 , GLU A:282 , HOH A:606 , ASP B:302	binding site for residue EDO A 415
16	AD7	SOFTWARE	ASP A:130 , GLN A:290 , HIS A:291 , VAL A:293	binding site for residue EDO A 416
17	AD8	SOFTWARE	VAL A:53 , VAL A:66 , LYS A:68 , ILE A:95 , PHE A:113 , GLU A:114 , VAL A:116 , ASN A:118 , MET A:163 , ASP A:175 , HOH A:504 , HOH A:603	binding site for residue 5Y2 A 417
18	AD9	SOFTWARE	LYS B:77 , ARG B:80 , ARG B:155 , ASN B:189 , HOH B:509	binding site for residue SO4 B 401
19	AE1	SOFTWARE	LYS B:229 , HIS B:234 , ARG B:244 , HOH B:506	binding site for residue SO4 B 402
20	AE2	SOFTWARE	TRP B:33 , LYS B:75 , LYS B:102 , SO4 B:404 , EDO B:413	binding site for residue SO4 B 403
21	AE3	SOFTWARE	ARG A:47 , LYS A:74 , LYS A:76 , SO4 A:406 , LYS B:75 , LYS B:102 , SO4 B:403	binding site for residue SO4 B 404
22	AE4	SOFTWARE	LYS B:279 , ARG B:280 , GLU B:282 , HOH B:549	binding site for residue SO4 B 405
23	AE5	SOFTWARE	ASP B:25 , TYR B:26 , GLU B:27	binding site for residue EDO B 406
24	AE6	SOFTWARE	ASP A:299 , ASP A:302 , LYS A:303 , ARG A:306 , EDO A:411 , GLU B:282 , LEU B:298 , HOH B:599	binding site for residue EDO B 407
25	AE7	SOFTWARE	HIS B:276 , SER B:277 , LYS B:279	binding site for residue EDO B 408
26	AE8	SOFTWARE	ARG B:191 , LYS B:198 , ASN B:238 , HOH B:569	binding site for residue EDO B 409
27	AE9	SOFTWARE	PHE B:232 , ARG B:244 , VAL B:248 , HOH B:506	binding site for residue EDO B 410
28	AF1	SOFTWARE	ASP B:156 , LYS B:158 , ALA B:193 , SER B:194	binding site for residue EDO B 411
29	AF2	SOFTWARE	TYR B:131 , ASP B:132 , PHE B:135 , ARG B:169	binding site for residue EDO B 412
30	AF3	SOFTWARE	VAL B:31 , LYS B:75 , LYS B:79 , PRO B:109 , SO4 B:403	binding site for residue EDO B 413
31	AF4	SOFTWARE	GLU A:282 , ASP B:299 , LYS B:303	binding site for residue EDO B 414
32	AF5	SOFTWARE	GLN B:36 , TYR B:39 , LEU B:41 , ASP B:103	binding site for residue EDO B 415
33	AF6	SOFTWARE	GLU A:32 , TRP A:33 , TYR B:196 , HIS B:234 , EDO B:418	binding site for residue EDO B 416
34	AF7	SOFTWARE	LYS B:158 , HIS B:160 , SER B:194 , EDO B:418	binding site for residue EDO B 417
35	AF8	SOFTWARE	PHE B:121 , GLU B:230 , EDO B:416 , EDO B:417 , HOH B:522	binding site for residue EDO B 418
36	AF9	SOFTWARE	SER B:311 , GLU B:317	binding site for residue EDO B 419
37	AG1	SOFTWARE	SER B:51 , VAL B:53 , VAL B:66 , LYS B:68 , ILE B:95 , PHE B:113 , GLU B:114 , HIS B:115 , VAL B:116 , MET B:163 , ILE B:174 , ASP B:175 , HOH B:580 , HOH B:591	binding site for residue 5Y2 B 420

(no "SS Bond" information available for 5H8B)

Asymmetric Unit

No.	Residues
1	Glu A:230	-	Pro A:231
2	Glu B:230	-	Pro B:231

(no "SAP(SNP)/Variant" information available for 5H8B)

(no "PROSITE Motif" information available for 5H8B)

(no "Exon" information available for 5H8B)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........hhhhhh...hhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h8b A   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeeee..eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhh........eeeeee......eeeeee.....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h8b B   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5H8B)

(no "CATH Domain" information available for 5H8B)

(no "Pfam Domain" information available for 5H8B)

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	Cis Peptide Bonds
		Glu A:230 - Pro A:231	[ RasMol ]
		Glu B:230 - Pro B:231	[ RasMol ]

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	5h8b
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	2.7.11.1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 37)

Sites (37, 37)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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Exons (0, 0)

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