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(-) Description

Title :  CRYSTAL STRUCTURE OF CK2 WITH COMPOUND 7H
 
Authors :  A. D. Ferguson
Date :  23 Dec 15  (Deposition) - 10 Feb 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Inhibitor, Ck2, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Dowling, M. Alimzhanov, L. Bao, C. Chuaqui, C. R. Denz, E. Jenkins N. A. Larsen, P. D. Lyne, T. Pontz, Q. Ye, G. A. Holdgate, L. Snow, N. O'Connell, A. D. Ferguson
Potent And Selective Ck2 Kinase Inhibitors With Effects On Wnt Pathway Signaling In Vivo.
Acs Med. Chem. Lett. V. 7 300 2016
PubMed-ID: 26985319  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00452

(-) Compounds

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-333
    Gene: CSNK2A1, CK2A1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CK II ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 44)

Asymmetric Unit (4, 44)
No.NameCountTypeFull Name
15Y32Ligand/Ion~{N}-[2-[2-AZANYLETHYL(METHYL)AMINO]-5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]PHENYL]ETHANAMIDE
2CL1Ligand/IonCHLORIDE ION
3EDO29Ligand/Ion1,2-ETHANEDIOL
4SO412Ligand/IonSULFATE ION
Biological Unit 1 (3, 21)
No.NameCountTypeFull Name
15Y31Ligand/Ion~{N}-[2-[2-AZANYLETHYL(METHYL)AMINO]-5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]PHENYL]ETHANAMIDE
2CL-1Ligand/IonCHLORIDE ION
3EDO14Ligand/Ion1,2-ETHANEDIOL
4SO46Ligand/IonSULFATE ION
Biological Unit 2 (3, 22)
No.NameCountTypeFull Name
15Y31Ligand/Ion~{N}-[2-[2-AZANYLETHYL(METHYL)AMINO]-5-[[3-CYANO-7-(CYCLOPROPYLAMINO)PYRAZOLO[1,5-A]PYRIMIDIN-5-YL]AMINO]PHENYL]ETHANAMIDE
2CL-1Ligand/IonCHLORIDE ION
3EDO15Ligand/Ion1,2-ETHANEDIOL
4SO46Ligand/IonSULFATE ION

(-) Sites  (44, 44)

Asymmetric Unit (44, 44)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:77 , ARG A:80 , ARG A:155 , ASN A:189 , SO4 A:406 , HOH A:522binding site for residue SO4 A 401
02AC2SOFTWAREARG A:191 , LYS A:198 , ASN A:238 , HOH A:573binding site for residue SO4 A 402
03AC3SOFTWARETRP A:33 , LYS A:75 , LYS A:102 , EDO A:418 , HOH A:534 , HOH A:546binding site for residue SO4 A 403
04AC4SOFTWAREARG A:280 , ARG A:283 , HOH A:510 , HOH A:576 , HOH A:656binding site for residue SO4 A 404
05AC5SOFTWARELYS A:75 , LYS A:102 , ARG A:107 , LYS B:74binding site for residue SO4 A 405
06AC6SOFTWARELYS A:74 , LYS A:76 , LYS A:77 , SO4 A:401binding site for residue SO4 A 406
07AC7SOFTWAREASP A:25 , TYR A:26 , GLU A:27binding site for residue EDO A 407
08AC8SOFTWAREGLN A:36 , TYR A:39 , VAL A:101binding site for residue EDO A 408
09AC9SOFTWARELYS A:49 , LYS A:158 , HOH A:516binding site for residue EDO A 409
10AD1SOFTWAREASN A:117 , THR A:119 , ASP A:165 , HIS A:166 , GLU A:167binding site for residue EDO A 410
11AD2SOFTWAREHIS A:276 , SER A:277 , LYS A:279binding site for residue EDO A 411
12AD3SOFTWARETHR A:129 , ASP A:130 , HIS A:291binding site for residue EDO A 412
13AD4SOFTWAREGLU A:32 , TRP A:33 , HOH A:601 , TYR B:196 , HIS B:234binding site for residue EDO A 413
14AD5SOFTWAREVAL A:11 , HIS A:148 , TYR A:211 , SER A:212 , ALA A:315 , HOH A:509 , HOH A:513 , HOH A:580binding site for residue EDO A 414
15AD6SOFTWARETHR A:17 , HIS A:18 , ARG A:19 , GLN A:40binding site for residue EDO A 415
16AD7SOFTWAREVAL A:248 , LEU A:249 , ARG A:278 , LYS A:279 , TRP A:281 , ASP A:302 , HOH A:597binding site for residue EDO A 416
17AD8SOFTWAREASP A:237 , ASN A:238 , HOH A:604binding site for residue EDO A 417
18AD9SOFTWAREVAL A:31 , TRP A:33 , LYS A:75 , ILE A:78 , LYS A:79 , SO4 A:403 , HOH A:652binding site for residue EDO A 418
19AE1SOFTWAREPRO A:6 , ARG A:8 , GLY A:185 , MET A:208 , HOH A:548binding site for residue EDO A 419
20AE2SOFTWARESER A:149 , HOH A:582binding site for residue EDO A 420
21AE3SOFTWARESER A:51 , VAL A:53 , VAL A:66 , LYS A:68 , ILE A:95 , PHE A:113 , GLU A:114 , VAL A:116 , ASN A:118 , ASN A:161 , MET A:163 , ILE A:174 , ASP A:175 , HOH A:511 , HOH A:516 , HOH A:638binding site for residue 5Y3 A 421
22AE4SOFTWARELYS B:77 , ARG B:80 , ARG B:155 , ASN B:189 , VAL B:192binding site for residue SO4 B 401
23AE5SOFTWAREGLY B:48 , LYS B:49 , 5Y3 B:423 , HOH B:558 , HOH B:604binding site for residue SO4 B 402
24AE6SOFTWARELYS B:229 , HIS B:234 , ARG B:244 , HOH B:533binding site for residue SO4 B 403
25AE7SOFTWARETRP B:33 , LYS B:75 , LYS B:102 , SO4 B:405 , HOH B:565 , HOH B:581 , HOH B:616 , HOH B:641binding site for residue SO4 B 404
26AE8SOFTWAREARG A:47 , LYS A:74 , LYS A:76 , LYS B:75 , LYS B:102 , SO4 B:404binding site for residue SO4 B 405
27AE9SOFTWAREARG A:195 , HOH A:537 , HIS B:29 , VAL B:30 , VAL B:31 , GLU B:32 , ILE B:82 , GLU B:86 , ILE B:100binding site for residue SO4 B 406
28AF1SOFTWARELYS A:75 , HOH B:657 , HOH B:716binding site for residue CL B 407
29AF2SOFTWAREASP B:25 , TYR B:26 , GLU B:27 , LYS B:44 , EDO B:414binding site for residue EDO B 408
30AF3SOFTWAREGLN B:36 , TYR B:39 , ASP B:103 , EDO B:421binding site for residue EDO B 409
31AF4SOFTWARELYS B:158 , HIS B:160 , SER B:194binding site for residue EDO B 410
32AF5SOFTWAREASP A:253 , ARG A:278 , HOH A:586 , ARG B:278 , HOH B:637binding site for residue EDO B 411
33AF6SOFTWAREARG B:280 , HOH B:509 , HOH B:535 , HOH B:597binding site for residue EDO B 412
34AF7SOFTWAREARG B:191 , LYS B:198 , ASN B:238binding site for residue EDO B 413
35AF8SOFTWARETRP B:24 , ARG B:43 , LYS B:44 , HIS B:183 , GLN B:186 , EDO B:408 , HOH B:571binding site for residue EDO B 414
36AF9SOFTWAREHIS B:276 , SER B:277 , LYS B:279binding site for residue EDO B 415
37AG1SOFTWAREASP A:299 , LYS A:303 , VAL B:293 , SER B:294binding site for residue EDO B 416
38AG2SOFTWARELYS B:229 , PHE B:232 , HOH B:524 , HOH B:533binding site for residue EDO B 417
39AG3SOFTWARELEU B:45 , ASN B:118 , 5Y3 B:423 , HOH B:621binding site for residue EDO B 418
40AG4SOFTWAREVAL B:11 , HIS B:148 , TYR B:211 , SER B:212 , ALA B:315 , HOH B:507 , HOH B:520 , HOH B:532binding site for residue EDO B 419
41AG5SOFTWAREASP B:130 , ARG B:134 , GLN B:290 , HIS B:291 , VAL B:293 , SER B:294binding site for residue EDO B 420
42AG6SOFTWAREARG B:21 , TYR B:39 , GLN B:40 , LEU B:41 , EDO B:409binding site for residue EDO B 421
43AG7SOFTWARETHR B:127 , ASP B:132 , HIS B:166 , ARG B:169 , HOH B:607binding site for residue EDO B 422
44AG8SOFTWARESER B:51 , VAL B:53 , VAL B:66 , LYS B:68 , ILE B:95 , PHE B:113 , GLU B:114 , VAL B:116 , ASN B:161 , MET B:163 , ILE B:174 , ASP B:175 , SO4 B:402 , EDO B:418 , HOH B:540 , HOH B:558binding site for residue 5Y3 B 423

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H8E)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:230 -Pro A:231
2Glu B:230 -Pro B:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H8E)

(-) Exons   (0, 0)

(no "Exon" information available for 5H8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhh........eeeeee......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.......hhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h8e A   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 


Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h8e B   2 SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQA 332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H8E)

(-) Gene Ontology  (37, 37)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        CSK21_HUMAN | P68400: 1jwh 1na7 1pjk 2pvr 2zjw 3amy 3at2 3at3 3at4 3axw 3bqc 3c13 3fwq 3h30 3juh 3mb6 3mb7 3nga 3nsz 3owj 3owk 3owl 3pe1 3pe2 3pe4 3q04 3q9w 3q9x 3q9y 3q9z 3qa0 3r0t 3rps 3tax 3u4u 3u87 3u9c 3w8l 3war 3wik 3wil 3wow 4dgl 4fbx 4grb 4gub 4gyw 4gyy 4gz3 4ib5 4kwp 4md7 4md8 4md9 4nh1 4rll 4ub7 4uba 5b0x 5clp 5cqu 5cqw 5cs6 5csh 5csp 5csv 5ct0 5ctp 5cu0 5cu2 5cu3 5cu4 5cu6 5cvf 5cvg 5cvh 5cx9 5h8b 5h8g 5hgv 5m44 5m4c 5m4f 5m4i 5mmf 5mmr 5mo5 5mo6 5mo7 5mo8 5mod 5moe 5moh 5mot 5mov 5mow 5mp8 5mpj 5n1v 5nqc

(-) Related Entries Specified in the PDB File

5h8b 5h8g