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(-) Description

Title :  BCL-XL WITH MOUSE BAK BH3 Q75L COMPLEX
 
Authors :  W. D. Fairlie, E. F. Lee, B. J. Smith
Date :  06 Nov 15  (Deposition) - 01 Jun 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.43
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Bcl-Xl, Bak, Bh3 Domain, Apoptosis, Bcl-2 Family (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. F. Lee, S. Grabow, S. Chappaz, G. Dewson, C. Hockings, R. M. Kluck, D. H. Gray, M. T. Witkowski, M. Evangelista, A. Pettikiriarachchi, P. Bouillet, R. M. Lane, P. E. Czabotar, P. M. Colman, B. J. Smith, B. T. Kile, W. D. Fairlie
Physiological Restraint Of Bak By Bcl-Xl Is Essential For Cell Survival.
Genes Dev. V. 30 1240 2016
PubMed-ID: 27198225  |  Reference-DOI: 10.1101/GAD.279414.116

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6P3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-26,83-209
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: DELETION OF RESIDUES 27-82
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL
 
Molecule 2 - BAK1 PROTEIN
    Chains: B
    Fragment: BH3 DOMAIN, UNP RESIDUES 61-94
    Mutation: YES
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:11 , SER A:14 , ARG A:91 , HOH A:2008 , HOH A:2014BINDING SITE FOR RESIDUE EDO A1209
2AC2SOFTWARESER A:106 , HOH A:2039 , HOH A:2084 , HOH A:2085BINDING SITE FOR RESIDUE EDO A1210
3AC3SOFTWARELYS A:16 , LYS A:20 , GLU A:98 , SER A:145 , GLY A:148 , ALA A:149 , VAL A:152BINDING SITE FOR RESIDUE EDO A1211
4AC4SOFTWARETYR A:101 , ASP A:107 , LEU A:108 , THR A:109 , HOH A:2047BINDING SITE FOR RESIDUE EDO A1212

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FMJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FMJ)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmj A   0 SMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQE 208
                                     9        19      ||85        95       105       115       125       135       145       155       165       175       185       195       205   
                                                     26|                                                                                                                             
                                                      83                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:24
                                                        
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 5fmj B  65 LEPNSILGQVGRLLALIGDDINRR  88
                                    74        84
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FMJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FMJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FMJ)

(-) Gene Ontology  (125, 146)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qve 4qvf 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5c3g 5fmk
        BAK_MOUSE | O08734: 2voh 5ktg

(-) Related Entries Specified in the PDB File

5fmi HUMAN BAK Q77L
5fmk BCL-XL WITH BAK BH3 COMPLEX