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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FUSION PROTEIN LINKED BY RHOA AND THE GAP DOMAIN OF MGCRACGAP
 
Authors :  K. Murayama, M. Kato-Murayama, T. Hosaka, T. Kitamura, S. Yokoyama, M.
Date :  16 Jun 15  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym./Biol. Unit :  A
Keywords :  Gtpase Activation, Fusion Protein, Small G Protein, Hydrolase Activator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Murayama, M. Kato-Murayama, T. Hosaka, T. Kawashima, T. Kitamura, S. Yokoyama, M. Shirouzu
Structural Basis Of G-Protein Target Alternation Of Mgcracgap By Phospholylation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSFORMING PROTEIN RHOA,RAC GTPASE-ACTIVATING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: CELL-FREE SYNTHESIS
    Expression System Plasmid: PCR2.1
    Expression System Vector Type: PLASMID
    Fragment: GAP DOMAIN, UNP RESIDUES 346-546
    Gene: RHOA, RACGAP1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MGCRACGAP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1AF31Ligand/IonALUMINUM FLUORIDE
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:19 , THR A:37 , AF3 A:502 , GDP A:503 , HOH A:695 , HOH A:753binding site for residue MG A 501
2AC2SOFTWAREGLY A:14 , ALA A:15 , LYS A:18 , PRO A:36 , THR A:37 , GLY A:62 , GLN A:63 , ARG A:247 , MG A:501 , GDP A:503 , HOH A:695 , HOH A:697 , HOH A:753binding site for residue AF3 A 502
3AC3SOFTWAREALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , PHE A:30 , TYR A:34 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , ARG A:247 , MG A:501 , AF3 A:502 , HOH A:639 , HOH A:695 , HOH A:752 , HOH A:753 , HOH A:773 , HOH A:799 , HOH A:817 , HOH A:834 , HOH A:869 , HOH A:911binding site for residue GDP A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C2K)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:221 -Pro A:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C2K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C2K)

(-) Exons   (0, 0)

(no "Exon" information available for 5C2K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhh....hhhhh........hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh.........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c2k A   2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKEGMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRIDGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAHAVPNPDPVTMSQDIKRQPKVVERLLSLPLEYWSQFMMV 407
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   ||  215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405  
                                                                                                                                                                                                                 185|                                                                                                                                                                                                     
                                                                                                                                                                                                                  210
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C2K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C2K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C2K)

(-) Gene Ontology  (104, 118)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser A:221 - Pro A:222   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RGAP1_HUMAN | Q9H0H5: 2ovj 3w6r 3wpq 3wps 4b6d 5c2j
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5a0f 5bwm 5c4m 5ez6 5fr1 5fr2 5hpy 5irc 5jcp 5jhg 5jhh 5m6x 5m70

(-) Related Entries Specified in the PDB File

5c2j