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(-) Description

Title :  DEERPOX VIRUS DPV022 IN COMPLEX WITH BAX BH3
 
Authors :  D. R. Burton, M. Kvansakul
Date :  23 Dec 14  (Deposition) - 05 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Viral Protein, Deerpox Virus, Apoptosis, Bcl-2, Bax Bh3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Burton, S. Caria, B. Marshall, M. Barry, M. Kvansakul
Structural Basis Of Deerpox Virus-Mediated Inhibition Of Apoptosis.
Acta Crystallogr. , Sect. D V. 71 1593 2015
PubMed-ID: 26249341  |  Reference-DOI: 10.1107/S1399004715009402

(-) Compounds

Molecule 1 - ANTIAPOPTOTIC MEMBRANE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BCL-2, UNP RESIDUES 1-155
    Organism Scientific: MULE DEER POXVIRUS
    Organism Taxid: 304399
    Strain: W-848-83
    Synonym: DPV022
 
Molecule 2 - APOPTOSIS REGULATOR BAX
    Chains: B
    Fragment: BH3, UNP RESIDUES 50-77
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL-2-LIKE PROTEIN 4, BCL2-L-4, BAX
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UF2)

(-) Sites  (0, 0)

(no "Site" information available for 4UF2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UF2)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UF2)

(-) Exons   (0, 0)

(no "Exon" information available for 4UF2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uf2 A   3 AAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDR 138
                                    12        22        32        42        52        62        72        82        92       102       112       122       132      


Chain B from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 4uf2 B   8 TKKLSECLKRIGDELDSNM  26
                                    17
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UF2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UF2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UF2)

(-) Gene Ontology  (148, 152)

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  4uf2
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  BAX_HUMAN | Q07812
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  Q08FF8_DPV84 | Q08FF8
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  Q08FX8_DPV83 | Q08FX8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAX_HUMAN | Q07812: 1f16 2g5b 2k7w 2lr1 3pk1 3pl7 4bd2 4bd6 4bd7 4bd8 4bdu 4s0o 4s0p 4zie 4zif 4zig 4zih 4zii
        Q08FF8_DPV84 | Q08FF8: 4uf1 4uf3
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        Q08FX8_DPV83 | Q08FX8: 4uf1 4uf3

(-) Related Entries Specified in the PDB File

4uf1 DEERPOX VIRUS DPV022 IN COMPLEX WITH BAK BH3
4uf3 DEERPOX VIRUS DPV022 IN COMPLEX WITH BIM BH3