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(-) Description

Title :  DISCOVERY OF VX-509 (DECERNOTINIB): A POTENT AND SELECTIVE JANUS KINASE (JAK) 3 INHIBITOR FOR THE TREATMENT OF AUTOIMMUNE DISEASE
 
Authors :  H. J. Zuccola, M. Ledeboer
Date :  17 Mar 15  (Deposition) - 12 Aug 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym./Biol. Unit :  A
Keywords :  Janus Kinase, Jak2, Jak3, Kinase, Inhibitor, Autoimmune, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. J. Farmer, M. W. Ledeboer, T. Hoock, M. J. Arnost, R. S. Bethiel, Y. L. Bennani, J. J. Black, C. L. Brummel, A. Chakilam, W. A. Dorsch, B. Fan, J. E. Cochran, S. Halas, E. M. Harrington, J. K. Hogan, D. Howe, H. Huang, D. H. Jacobs, L. M. Laitinen, S. Liao, S. Mahajan, V. Marone, G. Martinez-Botella, P. Mccarthy, D. Messersmith, M. Namchuk, L. Oh, M. S. Penney, A. C. Pierce, S. A. Raybuck, A. Rugg, F. G. Salituro, K. Saxena, D. Shannon, D. Shlyakter, L. Swenson, S. K. Tian, C. Town, J. Wang, T. Wang, M. W. Wannamaker, R. J. Winquist, H. J. Zuccola
Discovery Of Vx-509 (Decernotinib): A Potent And Selective Janus Kinase 3 Inhibitor For The Treatment Of Autoimmune Diseases.
J. Med. Chem. V. 58 7195 2015
PubMed-ID: 26230873  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00301

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 842-1132
    Gene: JAK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2,JAK-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
2VJK1Ligand/Ion(2R)-2-METHYL-2-[[2-(1H-PYRROLO[2,3-B]PYRIDIN-3-YL)PYRIMIDIN-4-YL]AMINO]-N-[2,2,2-TRIS(FLUORANYL)ETHYL]BUTANAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:856 , VAL A:863 , ALA A:880 , GLU A:930 , TYR A:931 , LEU A:932 , GLY A:935 , ARG A:980 , ASN A:981 , ILE A:982 , LEU A:983 , GLY A:993 , ASP A:994 , HOH A:4137binding site for residue VJK A 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YTI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YTI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4YTI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhhh.......eeeee.....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4yti A  842 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyyKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 1130
                                   851       861       871       881       891       901       911       924       934       944       954       964       974       984       994      1004  ||  1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      
                                                                                                       919|                                                                                1007-PTR                                                                                                                       
                                                                                                        923                                                                                 1008-PTR
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YTI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YTI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YTI)

(-) Gene Ontology  (114, 114)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4hge 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yth 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usy 5usz 5ut0 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

4ytc 4ytf 4yth