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(-) Description

Title :  JAK2 JH2 IN COMPLEX WITH AT9283
 
Authors :  D. E. Puleo, J. Schlessinger
Date :  14 Feb 17  (Deposition) - 07 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Pseudokinase Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. E. Puleo, K. Kucera, H. M. Hammaren, D. Ungureanu, A. S. Newton, O. Silvennoinen, W. L. Jorgensen, J. Schlessinger
Identification And Characterization Of Jak2 Pseudokinase Domain Small Molecule Binders.
Acs Med Chem Lett V. 8 618 2017
PubMed-ID: 28626521  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.7B00153

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: JAK2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2,JAK-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
135R1Ligand/Ion1-CYCLOPROPYL-3-{3-[5-(MORPHOLIN-4-YLMETHYL)-1H-BENZIMIDAZOL-2-YL]-1H-PYRAZOL-4-YL}UREA
2ACT1Ligand/IonACETATE ION
3DMS1Ligand/IonDIMETHYL SULFOXIDE
4GOL2Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:673 , CYS A:675 , ARG A:715 , TRP A:718binding site for residue GOL A 901
2AC2SOFTWAREPHE A:694 , HOH A:1036 , HOH A:1101 , HOH A:1107binding site for residue GOL A 902
3AC3SOFTWARELEU A:551 , LEU A:579 , GLU A:627 , PHE A:628 , VAL A:629 , LYS A:630 , PHE A:631 , GLY A:632 , LEU A:680 , HOH A:1009 , HOH A:1021 , HOH A:1077 , HOH A:1158binding site for residue 35R A 903
4AC4SOFTWAREGLY A:619 , ASP A:620 , ASN A:622binding site for residue ACT A 904
5AC5SOFTWAREASN A:782binding site for residue DMS A 905

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UT0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile A:716 -Pro A:717

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UT0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UT0)

(-) Exons   (0, 0)

(no "Exon" information available for 5UT0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeeee..eeeeeeeeeee.hhh.eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..hhhhh...eeee..........hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhh..hhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ut0 A 537 FHKIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSL 808
                                   546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UT0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UT0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UT0)

(-) Gene Ontology  (114, 114)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:716 - Pro A:717   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4hge 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yth 4yti 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usy 5usz 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

5usy 5usz 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6