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(-) Description

Title :  DISCOVERY OF VX-509 (DECERNOTINIB): A POTENT AND SELECTIVE JANUS KINASE (JAK) 3 INHIBITOR FOR THE TREATMENT OF AUTOIMMUNE DISEASES
 
Authors :  M. W. Ledeboer, H. J. Zuccola
Date :  17 Mar 15  (Deposition) - 12 Aug 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A
Keywords :  Jak3 Kinase, Jak2 Kinase, Inhibitor, Autoimmune, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. J. Farmer, M. W. Ledeboer, T. Hoock, M. J. Arnost, R. S. Bethiel, Y. L. Bennani, J. J. Black, C. L. Brummel, A. Chakilam, W. A. Dorsch, B. Fan, J. E. Cochran, S. Halas, E. M. Harrington, J. K. Hogan, D. Howe, H. Huang, D. H. Jacobs, L. M. Laitinen, S. Liao, S. Mahajan, V. Marone, G. Martinez-Botella, P. Mccarthy, D. Messersmith, M. Namchuk, L. Oh, M. S. Penney, A. C. Pierce, S. A. Raybuck, A. Rugg, F. G. Salituro, K. Saxena, D. Shannon, D. Shlyakter, L. Swenson, S. K. Tian, C. Town, J. Wang, T. Wang, M. W. Wannamaker, R. J. Winquist, H. J. Zuccola
Discovery Of Vx-509 (Decernotinib): A Potent And Selective Janus Kinase 3 Inhibitor For The Treatment Of Autoimmune Diseases.
J. Med. Chem. V. 58 7195 2015
PubMed-ID: 26230873  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00301

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 842-1132
    Gene: JAK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2,JAK-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
14671Ligand/IonN~2~-[2-(5-CHLORO-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)-5-FLUOROPYRIMIDIN-4-YL]-2-METHYL-N-(2,2,2-TRIFLUOROETHYL)-D-ALANINAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:855 , GLY A:856 , VAL A:863 , ALA A:880 , MET A:929 , GLU A:930 , TYR A:931 , LEU A:932 , ARG A:980 , ASN A:981 , ILE A:982 , LEU A:983 , GLY A:993 , ASP A:994 , HOH A:4114 , HOH A:4115 , HOH A:4166binding site for residue 467 A 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YTH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YTH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YTH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YTH)

(-) Exons   (0, 0)

(no "Exon" information available for 4YTH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee..eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhhh.......eeeee...hhhhheeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4yth A  842 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyyKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 1130
                                   851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001     |1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121         
                                                                                                                                                                                              1007-PTR                                                                                                                       
                                                                                                                                                                                               1008-PTR
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YTH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YTH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YTH)

(-) Gene Ontology  (114, 114)

Asymmetric/Biological Unit(hide GO term definitions)

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  4yth
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4hge 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yti 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usy 5usz 5ut0 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

4ytc 4ytf 4yti