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(-) Description

Title :  JAK2 JH2 IN COMPLEX WITH PRT062607
 
Authors :  D. E. Puleo, J. Schlessinger
Date :  14 Feb 17  (Deposition) - 07 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Pseudokinase Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. E. Puleo, K. Kucera, H. M. Hammaren, D. Ungureanu, A. S. Newton, O. Silvennoinen, W. L. Jorgensen, J. Schlessinger
Identification And Characterization Of Jak2 Pseudokinase Domain Small Molecule Binders.
Acs Med Chem Lett V. 8 618 2017
PubMed-ID: 28626521  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.7B00153

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 536-812
    Gene: JAK2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2,JAK-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
13YT1Ligand/Ion2-{[(1R,2S)-2-AMINOCYCLOHEXYL]AMINO}-4-{[3-(2H-1,2,3-TRIAZOL-2-YL)PHENYL]AMINO}PYRIMIDINE-5-CARBOXAMIDE
2ACT1Ligand/IonACETATE ION
3GOL2Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:673 , ARG A:715 , TRP A:718 , HOH A:1001 , HOH A:1019 , HOH A:1066binding site for residue GOL A 901
2AC2SOFTWAREPHE A:694 , HOH A:1067 , HOH A:1085binding site for residue GOL A 902
3AC3SOFTWARELEU A:551 , ILE A:559 , LEU A:579 , GLU A:627 , PHE A:628 , VAL A:629 , LYS A:630 , GLY A:632 , SER A:633 , LEU A:680 , HOH A:1024 , HOH A:1065 , HOH A:1087 , HOH A:1102 , HOH A:1116binding site for residue 3YT A 903
4AC4SOFTWAREGLY A:619 , ASP A:620 , GLU A:621 , ASN A:622binding site for residue ACT A 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UT2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile A:716 -Pro A:717

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UT2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UT2)

(-) Exons   (0, 0)

(no "Exon" information available for 5UT2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeeeeeee..eeeeeeeeeee.hhh.eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..........eeee..........hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhh..hhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ut2 A 536 VFHKIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSL 808
                                   545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UT2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UT2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UT2)

(-) Gene Ontology  (114, 114)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:716 - Pro A:717   [ RasMol ]  
 

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  5ut2
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  JAK2_HUMAN | O60674
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4hge 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yth 4yti 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usy 5usz 5ut0 5ut1 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

5usy 5usz 5ut0 5ut1 5ut3 5ut4 5ut5 5ut6