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(-) Description

Title :  JAK2 JH1 IN COMPLEX WITH JNJ-7706621
 
Authors :  D. E. Puleo, J. Schlessinger
Date :  14 Feb 17  (Deposition) - 07 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. E. Puleo, K. Kucera, H. M. Hammaren, D. Ungureanu, A. S. Newton, O. Silvennoinen, W. L. Jorgensen, J. Schlessinger
Identification And Characterization Of Jak2 Pseudokinase Domain Small Molecule Binders.
Acs Med Chem Lett V. 8 618 2017
PubMed-ID: 28626521  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.7B00153

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 840-1132
    Gene: JAK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2,JAK-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
3SKE2Ligand/Ion4-({5-AMINO-1-[(2,6-DIFLUOROPHENYL)CARBONYL]-1H-1,2,4-TRIAZOL-3-YL}AMINO)BENZENESULFONAMIDE
4SO45Ligand/IonSULFATE ION
Biological Unit 1 (4, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3SKE1Ligand/Ion4-({5-AMINO-1-[(2,6-DIFLUOROPHENYL)CARBONYL]-1H-1,2,4-TRIAZOL-3-YL}AMINO)BENZENESULFONAMIDE
4SO42Ligand/IonSULFATE ION
Biological Unit 2 (4, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
3SKE1Ligand/Ion4-({5-AMINO-1-[(2,6-DIFLUOROPHENYL)CARBONYL]-1H-1,2,4-TRIAZOL-3-YL}AMINO)BENZENESULFONAMIDE
4SO43Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:855 , VAL A:863 , ALA A:880 , MET A:929 , GLU A:930 , TYR A:931 , LEU A:932 , PRO A:933 , GLY A:935 , LEU A:983 , HOH A:1337 , HOH A:1383 , HOH A:1494 , GLN B:853binding site for residue SKE A 1201
02AC2SOFTWAREGLN A:955 , GLN A:959 , ARG A:1127 , HOH A:1306 , HOH A:1309 , HOH A:1389binding site for residue SO4 A 1202
03AC3SOFTWAREARG A:1090 , ASP A:1092 , GLY A:1093binding site for residue SO4 A 1203
04AC4SOFTWAREGLU A:1052 , LYS A:1053 , SER A:1054 , LYS A:1055 , SER A:1056 , ALA A:1059 , HOH A:1361binding site for residue GOL A 1204
05AC5SOFTWAREARG A:923 , GLU A:1080 , LYS A:1083 , HOH A:1317 , HOH A:1327 , HOH A:1469 , HOH A:1482 , LYS B:962binding site for residue GOL A 1205
06AC6SOFTWAREGLN A:853 , LEU B:855 , VAL B:863 , ALA B:880 , MET B:929 , GLU B:930 , TYR B:931 , LEU B:932 , GLY B:935 , LEU B:983 , HOH B:1308 , HOH B:1327 , HOH B:1376 , HOH B:1521binding site for residue SKE B 1201
07AC7SOFTWAREHOH A:1327 , GLN B:955 , GLN B:959 , ARG B:1127 , HOH B:1312 , HOH B:1319 , HOH B:1351binding site for residue SO4 B 1202
08AC8SOFTWAREARG B:1090 , ASP B:1092 , GLY B:1093 , HOH B:1442binding site for residue SO4 B 1203
09AC9SOFTWARELYS B:1053 , SER B:1054 , LYS B:1055 , SER B:1056 , ALA B:1059 , HOH B:1345 , HOH B:1346 , HOH B:1439binding site for residue SO4 B 1204
10AD1SOFTWARETYR B:918 , ARG B:922 , LEU B:1026 , GLN B:1072 , VAL B:1075binding site for residue GOL B 1205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5USY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5USY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5USY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5USY)

(-) Exons   (0, 0)

(no "Exon" information available for 5USY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhh........eeeeehhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee....hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5usy A  840 DPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyYKVKESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 1130
                                   849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009  ||  1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122        
                                                                                                                                                                                                1007-PTR2|                                                                                                                  
                                                                                                                                                                                                      1016                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhh........eeeeehhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee....hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5usy B  840 DPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyYKVKESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 1130
                                   849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009  ||  1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122        
                                                                                                                                                                                                1007-PTR2|                                                                                                                  
                                                                                                                                                                                                      1016
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5USY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5USY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5USY)

(-) Gene Ontology  (114, 114)

Asymmetric Unit(hide GO term definitions)

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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4hge 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yth 4yti 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usz 5ut0 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

5usz 5ut0 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6