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(-) Description

Title :  JAK2 KINASE (JH1 DOMAIN) IN COMPLEX WITH COMPOUND 8
 
Authors :  C. Eigenbrot, M. Ultsch
Date :  08 Oct 12  (Deposition) - 24 Oct 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Kinase, Phosphotransfer, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. J. Hanan, A. Van Abbema, K. Barrett, W. S. Blair, J. Blaney, C. Chang C. Eigenbrot, S. Flynn, P. Gibbons, C. A. Hurley, J. R. Kenny, J. Kulagowski, L. Lee, S. R. Magnuson, C. Morris, J. Murray, R. M. Pastor, T. Rawson, M. Siu, M. Ultsch, A. Zhou, D. Sampath, J. P. Lyssikatos
Discovery Of Potent And Selective Pyrazolopyrimidine Janus Kinase 2 Inhibitors.
J. Med. Chem. V. 55 10090 2012
PubMed-ID: 23061660  |  Reference-DOI: 10.1021/JM3012239

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK2
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: JH1 DOMAIN, UNP RESIDUES 833-1132
    Gene: JAK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 2, JAK-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
115V2Ligand/IonN-[1-(3-CHLOROPHENYL)-3-METHYL-1H-PYRAZOL-5-YL]PYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXAMIDE
2PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
115V1Ligand/IonN-[1-(3-CHLOROPHENYL)-3-METHYL-1H-PYRAZOL-5-YL]PYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
115V1Ligand/IonN-[1-(3-CHLOROPHENYL)-3-METHYL-1H-PYRAZOL-5-YL]PYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:855 , LYS A:857 , GLY A:858 , VAL A:863 , ALA A:880 , MET A:929 , GLU A:930 , LEU A:932 , GLY A:935 , ASP A:939 , LEU A:983 , ASP A:994 , HOH A:1357 , HOH A:1359BINDING SITE FOR RESIDUE 15V A 1201
2AC2SOFTWARELEU B:855 , GLY B:858 , VAL B:863 , ALA B:880 , GLU B:930 , LEU B:932 , GLY B:935 , ASP B:939 , LEU B:983 , GLY B:993 , ASP B:994 , HOH B:1362 , HOH B:1394BINDING SITE FOR RESIDUE 15V B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HGE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HGE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HGE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HGE)

(-) Exons   (0, 0)

(no "Exon" information available for 4HGE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4hgea_ A: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeeee..eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hge A  843 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyyKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 1132
                                   852       862       872       882       892       902       912      |926       936       946       956       966       976       986       996      1006||    1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      
                                                                                                      919|                                                                               1007-PTR                                                                                                                         
                                                                                                       924                                                                                1008-PTR                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4hgeb_ B: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhh.eeeeeeeeee..eeeeeeee.........eeeeeee...hhhhhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.....hhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hge B  839 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEyyKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 1132
                                   848       858       868       878       888       898       908       918||     932       942       952       962       972       982       992      1002    ||1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132
                                                                                                          919|                                                                               1007-PTR                                                                                                                         
                                                                                                           924                                                                                1008-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HGE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HGE)

(-) Gene Ontology  (114, 114)

Asymmetric Unit(hide GO term definitions)

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  4hge
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  JAK2_HUMAN | O60674
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK2_HUMAN | O60674: 2b7a 2w1i 2xa4 3e62 3e63 3e64 3fup 3io7 3iok 3jy9 3kck 3krr 3lpb 3q32 3rvg 3tjc 3tjd 3ugc 3zmm 4aqc 4bbe 4bbf 4c61 4c62 4d0w 4d0x 4d1s 4e4m 4e6d 4e6q 4f08 4f09 4fvp 4fvq 4fvr 4gfm 4gmy 4iva 4ji9 4jia 4p7e 4ytc 4ytf 4yth 4yti 4z32 4zim 5aep 5cf4 5cf5 5cf6 5cf8 5hez 5i4n 5l3a 5tq3 5tq4 5tq5 5tq6 5tq7 5tq8 5usy 5usz 5ut0 5ut1 5ut2 5ut3 5ut4 5ut5 5ut6

(-) Related Entries Specified in the PDB File

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