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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN (FTO) IN COMPLEX WITH PYRIDINE-2,4-DICARBOXYLATE (2,4-PDCA)
 
Authors :  W. S. Aik, M. A. Mcdonough, C. J. Schofield
Date :  13 Dec 12  (Deposition) - 03 Apr 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Double-Stranded Beta Helix, Jelly-Roll Motif, Oxidoreductase, Dioxygenase, Nucleic Acid Demethylase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Aik, M. Demetriades, M. K. K. Hamdan, E. A. L. Bagg, K. K. Yeoh, C. Lejeune, Z. Zhang, M. A. Mcdonough, C. J. Schofield
Structural Basis For Inhibition Of The Fat Mass And Obesity Associated Protein (Fto)
J. Med. Chem. V. 56 3680 2013
PubMed-ID: 23547775  |  Reference-DOI: 10.1021/JM400193D

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    Chains: A
    EC Number: 1.14.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-505
    Gene: FTO, KIAA1752
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PD21Ligand/IonPYRIDINE-2,4-DICARBOXYLIC ACID
3ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:231 , ASP A:233 , HIS A:307 , PD2 A:603BINDING SITE FOR RESIDUE ZN A 601
2AC2SOFTWARETYR A:106 , TYR A:108 , HIS A:232 , ASP A:233 , GLU A:234 , ARG A:322 , PD2 A:603BINDING SITE FOR RESIDUE GOL A 602
3AC3SOFTWAREARG A:96 , HIS A:231 , ASP A:233 , VAL A:244 , TYR A:295 , HIS A:307 , VAL A:309 , ARG A:316 , SER A:318 , ARG A:322 , ZN A:601 , GOL A:602BINDING SITE FOR RESIDUE PD2 A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IE0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:386 -Asn A:387
2Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IE0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IE0)

(-) Exons   (0, 0)

(no "Exon" information available for 4IE0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee...eeeeee....eeee..eeee.ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeeeee..................eeeeee..........eeeeeee...........eeeeee.......eeeee.....eeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh........................hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ie0 A  27 RGSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKADEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCELEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    36        46        56        66        76        86        96       106       116       126       136       146       156      |191       201       211       221       231       241       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502 
                                                                                                                                                                  163|                                                          250|                                                                                                                                                                                                                                                 
                                                                                                                                                                   189                                                           262
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IE0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IE0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IE0)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ie0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B1: 3lfm 4cxw 4cxx 4cxy 4idz 4ie4 4ie5 4ie6 4ie7 4qho 4qkn 4zs2 4zs3 5dab 5f8p

(-) Related Entries Specified in the PDB File

3lfm THE SAME PROTEIN IN COMPLEX WITH NOG AND 3-METHYLTHYMIDINE
4idz
4ie4
4ie5
4ie6
4ie7