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Title :   CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN (FTO) IN COMPLEX WITH N-[(3-HYDROXYPYRIDIN-2-YL)CARBONYL]GLYCINE (MD6)

Authors :   W. S. Aik, M. A. Mcdonough, C. J. Schofield

Date :   13 Dec 12 (Deposition) - 03 Apr 13 (Release) - 31 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Double-Stranded Beta Helix, Jelly-Roll Motif, Oxidoreductase, Dioxygenase, Nucleic Acid Demethylase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. S. Aik, M. Demetriades, M. K. K. Hamdan, E. A. L. Bagg, K. K. Yeoh, C. Lejeune, Z. Zhang, M. A. Mcdonough, C. J. Schofield
Structural Basis For Inhibition Of The Fat Mass And Obesity Associated Protein (Fto)
J. Med. Chem. V. 56 3680 2013
PubMed-ID: 23547775 | Reference-DOI: 10.1021/JM400193D

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
	Chains	:	A
	EC Number	:	1.14.11.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 32-505
	Gene	:	FTO, KIAA1752
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FAT MASS AND OBESITY-ASSOCIATED PROTEIN

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MD6	1	Ligand/Ion	N-[(3-HYDROXYPYRIDIN-2-YL)CARBONYL]GLYCINE
3	ZN	1	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:231 , ASP A:233 , HIS A:307 , MD6 A:602 , HOH A:702	BINDING SITE FOR RESIDUE ZN A 601
2	AC2	SOFTWARE	ARG A:96 , LEU A:203 , ASN A:205 , HIS A:231 , ASP A:233 , VAL A:244 , TYR A:295 , HIS A:307 , VAL A:309 , ARG A:316 , SER A:318 , ARG A:322 , ZN A:601 , GOL A:603 , HOH A:702 , HOH A:844	BINDING SITE FOR RESIDUE MD6 A 602
3	AC3	SOFTWARE	ARG A:96 , LEU A:109 , VAL A:228 , HIS A:231 , MD6 A:602 , HOH A:760 , HOH A:852 , HOH A:962	BINDING SITE FOR RESIDUE GOL A 603
4	AC4	SOFTWARE	TYR A:39 , TRP A:42 , PRO A:213 , TYR A:214 , HOH A:983 , HOH A:984 , HOH A:996	BINDING SITE FOR RESIDUE GOL A 604

(no "SS Bond" information available for 4IE5)

Asymmetric/Biological Unit

No.	Residues
1	Arg A:473	-	Pro A:474

(no "SAP(SNP)/Variant" information available for 4IE5)

(no "PROSITE Motif" information available for 4IE5)

(no "Exon" information available for 4IE5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeeee....eeee..eeee.ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeeeee........ee.......eeeeeee..........eeeeeee...........eeeeee.......eeeee....eeeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ie5 A  27 RGSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNITEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCELEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    36        46        56        66        76        86        96       106       116       128       138       148       158     ||192       202       212       222       232       242       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503
                                                                                                                            125|                                 164|                                                          250|                                                                                                                                                                                                                                                 
                                                                                                                             128                                  189                                                           262

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4IE5)

(no "CATH Domain" information available for 4IE5)

(no "Pfam Domain" information available for 4IE5)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Arg A:473 - Pro A:474	[ RasMol ]

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	4ie5
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	1.14.11.-
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UniProtKB/Swiss-Prot
	FTO_HUMAN \| Q9C0B1	:	3lfm 4cxw 4cxx 4cxy 4idz 4ie0 4ie4 4ie6 4ie7 4qho 4qkn 4zs2 4zs3 5dab 5f8p

3lfm	THE SAME PROTEIN IN COMPLEX WITH NOG AND 3-METHYLTHYMIDINE
4idz
4ie0
4ie4
4ie6
4ie7

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

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Gene Ontology (26, 26)

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