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(-) Description

Title :  CRYSTAL STRUCTURE OF FTO BOUND TO A SELECTIVE INHIBITOR
 
Authors :  C. -G. Yang, Y. Huang, J. Gan
Date :  07 Jun 14  (Deposition) - 03 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Jellyroll Folding, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Huang, J. Yan, Q. Li, J. Li, S. Gong, H. Zhou, J. Gan, H. Jiang, G. F. Jia C. Luo, C. -G. Yang
Meclofenamic Acid Selectively Inhibits Fto Demethylation Of M6A Over Alkbh5
Nucleic Acids Res. 2014
PubMed-ID: 25452335  |  Reference-DOI: 10.1093/NAR/GKU1276

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    Chains: A
    EC Number: 1.14.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-503
    Gene: FTO
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2JMS1Ligand/Ion2-[(2,6-DICHLORO-3-METHYL-PHENYL)AMINO]BENZOIC ACID
3MN1Ligand/IonMANGANESE (II) ION
4OGA1Ligand/IonN-OXALYLGLYCINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:96 , ASN A:205 , HIS A:231 , ASP A:233 , VAL A:244 , TYR A:295 , HIS A:307 , VAL A:309 , ARG A:316 , SER A:318 , THR A:320 , ARG A:322 , MN A:603 , GOL A:604 , HOH A:767BINDING SITE FOR RESIDUE OGA A 601
2AC2SOFTWARELEU A:90 , ARG A:96 , LEU A:109 , VAL A:228 , SER A:229 , HIS A:231 , GOL A:604BINDING SITE FOR RESIDUE JMS A 602
3AC3SOFTWAREHIS A:231 , ASP A:233 , HIS A:307 , OGA A:601 , HOH A:767BINDING SITE FOR RESIDUE MN A 603
4AC4SOFTWAREARG A:96 , TYR A:106 , TYR A:108 , HIS A:232 , ASP A:233 , GLU A:234 , ARG A:322 , OGA A:601 , JMS A:602BINDING SITE FOR RESIDUE GOL A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QKN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QKN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QKN)

(-) Exons   (0, 0)

(no "Exon" information available for 4QKN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.....hhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee...eeeeee....eeee..eeee.ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh....eeeeeee........ee.......eeeeeee..........eeeeeee........eeeeeee.......eeeeee...eeeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qkn A  28 GSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKAQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    37        47        57        67        77        87        97       107       117    || 132       142       152       162||     196       206       216       226       236       246   ||  269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499    
                                                                                                                        122|                                163|                                                           250|                                                                                                                                                                                                                                               
                                                                                                                         128                                 188                                                            264
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QKN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QKN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QKN)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:473 - Pro A:474   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B1: 3lfm 4cxw 4cxx 4cxy 4idz 4ie0 4ie4 4ie5 4ie6 4ie7 4qho 4zs2 4zs3 5dab 5f8p

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QKN)