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(-) Description

Title :  CRYSTAL STRUCTURE OF FTO-IN115
 
Authors :  J. Chai, B. Zhou, W. Liu, Z. Han, T. Niu
Date :  19 Aug 15  (Deposition) - 24 Aug 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Fat Mass And Obesity Associated (Fto) Protein, Small Molecule, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Chai, B. Zhou, W. Liu, Z. Han, T. Niu
Crystal Structure Of Fto-In115
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    Chains: A
    EC Number: 1.14.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 33-505
    Gene: FTO, KIAA1752
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
158W1Ligand/IonN-(5-CHLORO-2,4-DIHYDROXYPHENYL)-1-PHENYLCYCLOBUTANECARBOXAMIDE
2AKG1Ligand/Ion2-OXOGLUTARIC ACID
3CL9Ligand/IonCHLORIDE ION
4FE21Ligand/IonFE (II) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:45 , TYR A:46 , PRO A:47 , LYS A:48 , LEU A:301binding site for residue CL A 601
2AC2SOFTWARETRP A:278binding site for residue CL A 602
3AC3SOFTWARELEU A:406binding site for residue CL A 604
4AC4SOFTWARETYR A:199binding site for residue CL A 606
5AC5SOFTWARECYS A:249binding site for residue CL A 608
6AC6SOFTWAREHIS A:231 , HIS A:307 , AKG A:611 , HOH A:762binding site for residue FE2 A 610
7AC7SOFTWAREARG A:96 , TYR A:108 , ASN A:205 , VAL A:228 , VAL A:244 , TYR A:295 , VAL A:309 , ARG A:316 , SER A:318 , THR A:320 , FE2 A:610 , HOH A:719 , HOH A:756 , HOH A:762binding site for residue AKG A 611
8AC8SOFTWARETYR A:39 , ILE A:85 , LEU A:90 , LEU A:91 , THR A:92 , PRO A:93 , LEU A:215 , LYS A:216 , MET A:226 , ALA A:227 , SER A:229 , HOH A:722binding site for residue 58W A 612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DAB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DAB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DAB)

(-) Exons   (0, 0)

(no "Exon" information available for 5DAB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee...eeeeee....eeee..eeee.ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh..eeeeeeehhhhh...ee.......eeeeeee..........eeeeeee...........eeeeee.......eeeee.....eeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............................hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dab A  27 LESHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNTEAEIAAACETFLKLNDYLQIETIQALEELAAKEDVEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQL 500
                                    36        46        56        66        76        86        96       106       116       129       139       149       159 ||    195       205       215       225       235       245   ||  266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496    
                                                                                                                           124|                              161|                                                          249|                                                                                                                                                                                                                                               
                                                                                                                            128                               188                                                           261
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DAB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DAB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DAB)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:473 - Pro A:474   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B1: 3lfm 4cxw 4cxx 4cxy 4idz 4ie0 4ie4 4ie5 4ie6 4ie7 4qho 4qkn 4zs2 4zs3 5f8p

(-) Related Entries Specified in the PDB File

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