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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN (FTO) IN COMPLEX WITH N-[(3-HYDROXYPYRIDIN-2-YL)CARBONYL]GLYCINE (MD6)
 
Authors :  W. S. Aik, M. A. Mcdonough, C. J. Schofield
Date :  13 Dec 12  (Deposition) - 03 Apr 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Double-Stranded Beta Helix, Jelly-Roll Motif, Oxidoreductase, Dioxygenase, Nucleic Acid Demethylase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. S. Aik, M. Demetriades, M. K. K. Hamdan, E. A. L. Bagg, K. K. Yeoh, C. Lejeune, Z. Zhang, M. A. Mcdonough, C. J. Schofield
Structural Basis For Inhibition Of The Fat Mass And Obesity Associated Protein (Fto)
J. Med. Chem. V. 56 3680 2013
PubMed-ID: 23547775  |  Reference-DOI: 10.1021/JM400193D

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    ChainsA
    EC Number1.14.11.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 32-505
    GeneFTO, KIAA1752
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MD61Ligand/IonN-[(3-HYDROXYPYRIDIN-2-YL)CARBONYL]GLYCINE
3ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:231 , ASP A:233 , HIS A:307 , MD6 A:602 , HOH A:702BINDING SITE FOR RESIDUE ZN A 601
2AC2SOFTWAREARG A:96 , LEU A:203 , ASN A:205 , HIS A:231 , ASP A:233 , VAL A:244 , TYR A:295 , HIS A:307 , VAL A:309 , ARG A:316 , SER A:318 , ARG A:322 , ZN A:601 , GOL A:603 , HOH A:702 , HOH A:844BINDING SITE FOR RESIDUE MD6 A 602
3AC3SOFTWAREARG A:96 , LEU A:109 , VAL A:228 , HIS A:231 , MD6 A:602 , HOH A:760 , HOH A:852 , HOH A:962BINDING SITE FOR RESIDUE GOL A 603
4AC4SOFTWARETYR A:39 , TRP A:42 , PRO A:213 , TYR A:214 , HOH A:983 , HOH A:984 , HOH A:996BINDING SITE FOR RESIDUE GOL A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IE5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IE5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IE5)

(-) Exons   (0, 0)

(no "Exon" information available for 4IE5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeeee....eeee..eeee.ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeeeee........ee.......eeeeeee..........eeeeeee...........eeeeee.......eeeee....eeeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ie5 A  27 RGSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNITEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCELEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    36        46        56        66        76        86        96       106       116       128       138       148       158     ||192       202       212       222       232       242       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503
                                                                                                                            125|                                 164|                                                          250|                                                                                                                                                                                                                                                 
                                                                                                                             128                                  189                                                           262                                                                                                                                                                                                                                                 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IE5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IE5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IE5)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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    Arg A:473 - Pro A:474   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B13lfm 4cxw 4cxx 4cxy 4idz 4ie0 4ie4 4ie6 4ie7 4qho 4qkn 4zs2 4zs3 5dab 5f8p

(-) Related Entries Specified in the PDB File

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