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(-) Description

Title :  STRUCTURAL COMPLEX OF 5-AMINOFLUORESCEIN BOUND TO THE FTO PROTEIN
 
Authors :  T. Wang, T. Hong, Y. Huang, C. G. Yang, X. Zhou
Date :  13 May 15  (Deposition) - 04 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Fluorescent Protein-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Wang, T. Hong, Y. Huang, H. Su, F. Wu, Y. Chen, L. Wei, W. Huang, X. Hua, Y. Xia, J. Xu, J. Gan, B. Yuan, Y. Feng, X. Zhang, C. G. Yang, X. Zhou
Fluorescein Derivatives As Bifunctional Molecules For The Simultaneous Inhibiting And Labeling Of Fto Protein
J. Am. Chem. Soc. V. 137 13736 2015
PubMed-ID: 26457839  |  Reference-DOI: 10.1021/JACS.5B06690

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    Chains: A
    EC Number: 1.14.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-505
    Gene: FTO, KIAA1752
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1A4F1Ligand/Ion5-AMINO-2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)BENZOIC ACID
2AKG1Ligand/Ion2-OXOGLUTARIC ACID
3MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:96 , ASN A:205 , HIS A:231 , VAL A:244 , TYR A:295 , ARG A:316 , SER A:318 , THR A:320 , ARG A:322 , A4F A:602 , MN A:603 , HOH A:729binding site for residue AKG A 601
2AC2SOFTWAREILE A:85 , LEU A:91 , PRO A:93 , ARG A:96 , TYR A:108 , VAL A:228 , SER A:229 , HIS A:231 , AKG A:601 , HOH A:729binding site for residue A4F A 602
3AC3SOFTWAREHIS A:231 , ASP A:233 , HIS A:307 , AKG A:601 , HOH A:718binding site for residue MN A 603

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:77 -A:392

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZS3)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZS3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee....hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee...eeeeee....eeee..eeee.ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeeeeehhhhh...ee.......eeeeeee..........eeeeeee.........eeeeeee.......eeeeee....eeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zs3 A  28 GSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    37        47        57        67        77        87        97       107       117   ||  133       143       153       189       199       209       219       229       239       249||     271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501  
                                                                                                                       121|                               162|                                                          250|                                                                                                                                                                                                                                                
                                                                                                                        128                                189                                                           263
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZS3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZS3)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  4zs3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B1: 3lfm 4cxw 4cxx 4cxy 4idz 4ie0 4ie4 4ie5 4ie6 4ie7 4qho 4qkn 4zs2 5dab 5f8p

(-) Related Entries Specified in the PDB File

4zs2