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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN (FTO) IN COMPLEX WITH N-OXALYLGLYCINE (NOG)
 
Authors :  W. S. Aik, M. A. Mcdonough, C. J. Schofield
Date :  13 Dec 12  (Deposition) - 03 Apr 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym./Biol. Unit :  A
Keywords :  Double-Stranded Beta Helix, Jelly-Roll Motif, Oxidoreductase, Dioxygenase, Nucleic Acid Demethylase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Aik, M. Demetriades, M. K. K. Hamdan, E. A. L. Bagg, K. K. Yeoh, C. Lejeune, Z. Zhang, M. A. Mcdonough, C. J. Schofield
Structural Basis For Inhibition Of The Fat Mass And Obesity Associated Protein (Fto)
J. Med. Chem. V. 56 3680 2013
PubMed-ID: 23547775  |  Reference-DOI: 10.1021/JM400193D

(-) Compounds

Molecule 1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO
    Chains: A
    EC Number: 1.14.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-505
    Gene: FTO, KIAA1752
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FAT MASS AND OBESITY-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NI1Ligand/IonNICKEL (II) ION
3OGA1Ligand/IonN-OXALYLGLYCINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:96 , ASN A:205 , HIS A:231 , ASP A:233 , VAL A:244 , TYR A:295 , HIS A:307 , VAL A:309 , ARG A:316 , SER A:318 , THR A:320 , ARG A:322 , GOL A:602 , NI A:603 , HOH A:702BINDING SITE FOR RESIDUE OGA A 601
2AC2SOFTWAREARG A:96 , TYR A:106 , TYR A:108 , HIS A:231 , HIS A:232 , ASP A:233 , GLU A:234 , ARG A:322 , OGA A:601BINDING SITE FOR RESIDUE GOL A 602
3AC3SOFTWAREHIS A:231 , ASP A:233 , HIS A:307 , OGA A:601 , HOH A:702BINDING SITE FOR RESIDUE NI A 603

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:77 -A:392

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:386 -Asn A:387
2Arg A:473 -Pro A:474

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IDZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IDZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IDZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee...eeeeee....eeee..eeee.ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeeeee........ee.......eeeeeee..........eeeeeee.........eeeeee.......eeeee..eeeeeee..hhhhheeeeee.....eeeeeee.......hhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............................hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4idz A  27 RGSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKADEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQLLEA 503
                                    36        46        56        66        76        86        96       106       116      |128       138       148       158    || 193       203       213       223       233       243      |266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       
                                                                                                                          123|                                  163|                                                          250|                                                                                                                                                                                                                                               
                                                                                                                           126                                   189                                                           264
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IDZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IDZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IDZ)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTO_HUMAN | Q9C0B1: 3lfm 4cxw 4cxx 4cxy 4ie0 4ie4 4ie5 4ie6 4ie7 4qho 4qkn 4zs2 4zs3 5dab 5f8p

(-) Related Entries Specified in the PDB File

3lfm THE SAME PROTEIN IN COMPLEX WITH NOG AND 3-METHYLTHYMIDINE
4ie0
4ie4
4ie5
4ie6
4ie7