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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN AKR1B10 COMPLEXED WITH NADP+ AND JF0064
 
Authors :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, S. Porte, A. R. De Lera, M. J. J. A. De La Fuente, G. Klebe, J. Farres, X. Pares, A. Podjarny
Date :  10 Dec 12  (Deposition) - 19 Feb 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  X
Keywords :  Tim Barrel, Aldo-Keto Reductase, Oxidoreductase, Halogenated Compound, Cytosolic, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, S. Porte, A. R. De Lera, M. J. Martin, S. Manzanaro, J. A. De La Fuente, F. Terwesten, M. Betz, G. Klebe, J. Farres, X. Pares, A. Podjarny
Identification Of A Novel Polyfluorinated Compound As A Lea To Inhibit The Human Enzymes Aldose Reductase And Akr1B10: Structure Determination Of Both Ternary Complexes And Implications For Drug Design.
Acta Crystallogr. , Sect. D V. 70 889 2014
PubMed-ID: 24598757  |  Reference-DOI: 10.1107/S1399004713033452

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    ChainsX
    EC Number1.1.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET30-XA/LIC
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneAKR1B10, AKR1B11
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymARL-1, ALDOSE REDUCTASE-LIKE, ALDOSE REDUCTASE-RELATED PROTEIN, ARP, HARP, SMALL INTESTINE REDUCTASE, SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
164I1Ligand/Ion2,2',3,3',5,5',6,6'-OCTAFLUOROBIPHENYL-4,4'-DIOL
2MLY7Mod. Amino AcidN-DIMETHYL-LYSINE
3MLZ8Mod. Amino AcidN-METHYL-LYSINE
4NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY X:19 , THR X:20 , TRP X:21 , ASP X:44 , TYR X:49 , LYS X:78 , HIS X:111 , SER X:160 , ASN X:161 , GLN X:184 , TYR X:210 , SER X:211 , PRO X:212 , LEU X:213 , GLY X:214 , SER X:215 , PRO X:216 , ASP X:217 , LEU X:229 , ALA X:246 , ILE X:261 , PRO X:262 , MLY X:263 , SER X:264 , VAL X:265 , THR X:266 , ARG X:269 , GLU X:272 , ASN X:273 , 64I X:402 , HOH X:526 , HOH X:579 , HOH X:580 , HOH X:582 , HOH X:591 , HOH X:661BINDING SITE FOR RESIDUE NAP X 401
2AC2SOFTWARETRP X:21 , TYR X:49 , TRP X:80 , HIS X:111 , TRP X:112 , TRP X:220 , CYS X:299 , ASN X:300 , LEU X:301 , NAP X:401 , HOH X:620BINDING SITE FOR RESIDUE 64I X 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ICC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ICC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ICC)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4ICC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain X from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4iccx_ X: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee..ee........hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeee.....hhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee....................hhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4icc X   1 MATFVELSTKAkMPIVGLGTWKSPLGkVkEAVkVAIDAGYRHIDCAYVYQNEHEVGEAIQEkIQEkAVKREDLFIVSKLWPTFFERPLVRKAFEkTLkDLKLSYLDVYLIHWPQGFKSGDDLFPRDDKGNAIGGKATFLDAWEAMEELVDEGLVkALGVSNFSHFQIEKLLNKPGLkYKPVTNQVECHPYLTQEKLIQYCHSkGITVTAYSPLGSPDRPWAKPEDPSLLEDPkIKEIAAKHkkTAAQVLIRFHIQRNVIVIPkSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNLLQSSHLEDYPFNAEY 316
                                    10 |      20      | 30  |     40        50        60 |   |  70        80        90    |  100       110       120       130       140       150    |  160       170      |180       190       200  |    210       220       230  |    240 ||    250       260  |    270       280       290       300       310      
                                      12-MLZ         27-MLY |                           62-MLZ                           95-MLY                                                     155-MLZ               177-MLZ                   203-MLY                       233-MLZ  242-MLY              263-MLY                                                 
                                                       29-MLZ                               66-MLY                          98-MLZ                                                                                                                                          243-MLZ                                                                     
                                                           33-MLY                                                                                                                                                                                                                                                                                       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O602181zua 4ga8 4gab 4gq0 4gqg 4i5x 4jih 4jii 4wev 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5liy 5m2f

(-) Related Entries Specified in the PDB File

1zua 4ice 4icf 4igs