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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN AKR1B10 COMPLEXED WITH NADP+ AND THE INHIBITOR MK204
 
Authors :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, J. Fanfrlik, M. Kamlar, J. Ve P. Hobza, A. Podjarny
Date :  15 Jul 16  (Deposition) - 12 Oct 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  X
Keywords :  Alpha-Beta Tim Barrel, Cytosol, Aldo-Keto Reductase, Halogenated Ligand, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Cousido-Siah, F. X. Ruiz, J. Fanfrlik, J. Gimenez-Dejoz, A. Mitschler, M. Kamlar, J. Vesely, H. Ajani, X. Pares, J. Farres, P. Hobza, A. D. Podjarny
Idd388 Polyhalogenated Derivatives As Probes For An Improve Structure-Based Selectivity Of Akr1B10 Inhibitors.
Acs Chem. Biol. V. 11 2693 2016
PubMed-ID: 27359042  |  Reference-DOI: 10.1021/ACSCHEMBIO.6B00382

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    Chains: X
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AKR1B10, AKR1B11
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARL-1,ALDOSE REDUCTASE-LIKE,ALDOSE REDUCTASE-RELATED PROTEIN,HARP,SMALL INTESTINE REDUCTASE,SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1DQP1Ligand/Ion{5-CHLORO-2-[(PENTABROMOBENZYL)CARBAMOYL]PHENOXY}ACETICACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MLY5Mod. Amino AcidN-DIMETHYL-LYSINE
4MLZ4Mod. Amino AcidN-METHYL-LYSINE
5NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY X:19 , THR X:20 , TRP X:21 , ASP X:44 , TYR X:49 , HIS X:111 , SER X:160 , ASN X:161 , GLN X:184 , TYR X:210 , SER X:211 , PRO X:212 , LEU X:213 , GLY X:214 , SER X:215 , PRO X:216 , ASP X:217 , ALA X:246 , ILE X:261 , PRO X:262 , MLY X:263 , SER X:264 , VAL X:265 , THR X:266 , ARG X:269 , GLU X:272 , ASN X:273 , DQP X:402 , HOH X:520 , HOH X:527binding site for residue NAP X 401
2AC2SOFTWARETRP X:21 , TYR X:49 , TRP X:80 , HIS X:111 , TRP X:112 , PHE X:123 , TYR X:210 , PRO X:219 , TRP X:220 , PRO X:232 , CYS X:299 , ASN X:300 , LEU X:301 , SER X:304 , PHE X:312 , NAP X:401binding site for residue DQP X 402
3AC3SOFTWAREGLU X:6 , HIS X:201 , THR X:206 , ASN X:257binding site for residue EDO X 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LIY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LIY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LIY)

(-) Exons   (0, 0)

(no "Exon" information available for 5LIY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee..eee.......hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5liy X   1 MATFVELSTKAKMPIVGLGTWKSPLGKVKEAVkVAIDAGYRHIDCAYVYQNEHEVGEAIQEkIQEKAVKREDLFIVSKLWPTFFERPLVRKAFEkTLKDLKLSYLDVYLIHWPQGFKSGDDLFPRDDKGNAIGGKATFLDAWEAMEELVDEGLVkALGVSNFSHFQIEKLLNKPGLkYKPVTNQVECHPYLTQEKLIQYCHSkGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHkkTAAQVLIRFHIQRNVIVIPkSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNLLQSSHLEDYPFNAEY 316
                                    10        20        30  |     40        50        60 |      70        80        90    |  100       110       120       130       140       150    |  160       170      |180       190       200  |    210       220       230       240 ||    250       260  |    270       280       290       300       310      
                                                           33-MLY                       62-MLZ                           95-MLY                                                     155-MLZ               177-MLZ                   203-MLY                                242-MLY              263-MLY                                                 
                                                                                                                                                                                                                                                                            243-MLZ
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LIY)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  5liy
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  AK1BA_HUMAN | O60218
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  1.1.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O60218: 1zua 4ga8 4gab 4gq0 4gqg 4i5x 4icc 4jih 4jii 4wev 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5m2f

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LIY)