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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN AKR1B10 COMPLEXED WITH NADP+ AND THE SYNTHETIC RETINOID UVI2008
 
Authors :  F. X. Ruiz, A. Cousido-Siah, A. Mitschler, S. Porte, S. Alvarez, M. Domi R. Alvarez, A. R. De Lera, X. Pares, J. Farres, A. Podjarny
Date :  12 Oct 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  X
Keywords :  Tim Barrel, Aldo-Keto Reductase, Oxidoreductase, Synthetic Retinoid, Cytosolic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. X. Ruiz, I. Crespo, S. Alvarez, S. Porte, J. Gimenez-Dejoz, A. Cousido-Siah, A. Mitschler, A. R. De Lera, X. Pares, A. Podjarny, J. Farres
Structural Basis For The Inhibition Of Akr1B10 By The C3 Brominated Ttnpb Derivative Uvi2008.
Chem. Biol. Interact. 2017
PubMed-ID: 28161411  |  Reference-DOI: 10.1016/J.CBI.2017.01.026

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    Chains: X
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AKR1B10, AKR1B11
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARL-1,ALDOSE REDUCTASE-LIKE,ALDOSE REDUCTASE-RELATED PROTEIN,HARP,SMALL INTESTINE REDUCTASE,SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 20)

Asymmetric/Biological Unit (5, 20)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MLY8Mod. Amino AcidN-DIMETHYL-LYSINE
3MLZ9Mod. Amino AcidN-METHYL-LYSINE
4NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5UV81Ligand/Ion3-BROMO-4-[(1E)-2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)PROP-1-EN-1-YL]BENZOIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY X:19 , THR X:20 , TRP X:21 , ASP X:44 , TYR X:49 , LYS X:78 , HIS X:111 , SER X:160 , ASN X:161 , GLN X:184 , TYR X:210 , SER X:211 , PRO X:212 , LEU X:213 , GLY X:214 , SER X:215 , PRO X:216 , ASP X:217 , ALA X:246 , ILE X:261 , PRO X:262 , MLY X:263 , SER X:264 , VAL X:265 , THR X:266 , ARG X:269 , GLU X:272 , ASN X:273 , UV8 X:402 , HOH X:508 , HOH X:523 , HOH X:529 , HOH X:535 , HOH X:561 , HOH X:587binding site for residue NAP X 401
2AC2SOFTWARETRP X:21 , TYR X:49 , TRP X:80 , HIS X:111 , PHE X:123 , PRO X:124 , ARG X:125 , GLY X:129 , ALA X:131 , LEU X:301 , LEU X:302 , NAP X:401binding site for residue UV8 X 402
3AC3SOFTWAREGLU X:6 , HIS X:201 , GLY X:204 , ASN X:257 , HOH X:563binding site for residue EDO X 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M2F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5M2F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M2F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M2F)

(-) Exons   (0, 0)

(no "Exon" information available for 5M2F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain X from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee.......hhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeee.....hhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.......eeeeeee......hhhhhhhhhhh..eeeee....................hhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhh........hhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m2f X   1 MATFVELSTKAkMPIVGLGTWKSPLGkVkEAVkVAIDAGYRHIDCAYVYQNEHEVGEAIQEkIQEkAVKREDLFIVSKLWPTFFERPLVRKAFEkTLkDLKLSYLDVYLIHWPQGFKSGDDLFPRDDKGNAIGGKATFLDAWEAMEELVDEGLVkALGVSNFSHFQIEkLLNKPGLkYKPVTNQVECHPYLTQEKLIQYCHSkGITVTAYSPLGSPDRPWAKPEDPSLLEDPkIkEIAAKHkkTAAQVLIRFHIQRNVIVIPkSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNLLQSSHLEDYPFNAEY 316
                                    10 |      20      | 30  |     40        50        60 |   |  70        80        90    |  100       110       120       130       140       150    |  160       170      |180       190       200  |    210       220       230  | |  240 ||    250       260  |    270       280       290       300       310      
                                      12-MLZ         27-MLY |                           62-MLZ                           95-MLY                                                     155-MLZ       169-MLZ 177-MLZ                   203-MLY                       233-MLZ    ||                 263-MLY                                                 
                                                       29-MLZ                               66-MLY                          98-MLZ                                                                                                                                  235-MLY  ||                                                                         
                                                           33-MLY                                                                                                                                                                                                          242-MLY                                                                      
                                                                                                                                                                                                                                                                            243-MLZ
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M2F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M2F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M2F)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  5m2f
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  AK1BA_HUMAN | O60218
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O60218: 1zua 4ga8 4gab 4gq0 4gqg 4i5x 4icc 4jih 4jii 4wev 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5liy

(-) Related Entries Specified in the PDB File

1zua