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(-) Description

Title :  HUMAN AKR1B10 MUTANT V301L COMPLEXED WITH NADP+ AND FIDARESTAT
 
Authors :  A. Cousido-Siah, F. X. Ruiz Figueras, A. Mitschler, A. Podjarny
Date :  25 Jul 12  (Deposition) - 20 Mar 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Aldo-Keto Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. X. Ruiz, A. Cousido-Siah, A. Mitschler, J. Farres, X. Pares, A. Podjarny
X-Ray Structure Of The V301L Aldo-Keto Reductase 1B10 Complexed With Nadp(+) And The Potent Aldose Reductase Inhibitor Fidarestat: Implications For Inhibitor Binding An Selectivity.
Chem. Biol. Interact V. 202 178 2013
PubMed-ID: 23295227  |  Reference-DOI: 10.1016/J.CBI.2012.12.013

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    Chains: A
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30-XA/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AKR1B10, AKR1B11
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARL-1, ALDOSE REDUCTASE-LIKE, ALDOSE REDUCTASE-RELATED PROTEIN, ARP, HARP, SMALL INTESTINE REDUCTASE, SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FID1Ligand/Ion(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:19 , THR A:20 , TRP A:21 , LYS A:22 , ASP A:44 , TYR A:49 , HIS A:111 , SER A:160 , ASN A:161 , GLN A:184 , TYR A:210 , SER A:211 , PRO A:212 , LEU A:213 , GLY A:214 , SER A:215 , PRO A:216 , ASP A:217 , ALA A:246 , ILE A:261 , PRO A:262 , LYS A:263 , SER A:264 , VAL A:265 , THR A:266 , ARG A:269 , GLU A:272 , ASN A:273 , FID A:402 , HOH A:536 , HOH A:560 , HOH A:571 , HOH A:600 , HOH A:613 , HOH A:682BINDING SITE FOR RESIDUE NAP A 401
2AC2SOFTWARETRP A:21 , VAL A:48 , TYR A:49 , TRP A:80 , HIS A:111 , TRP A:112 , PHE A:123 , TRP A:220 , CYS A:299 , ASN A:300 , LEU A:301 , NAP A:401 , HOH A:542BINDING SITE FOR RESIDUE FID A 402
3AC3SOFTWAREALA A:46 , TYR A:47 , VAL A:48 , LYS A:78 , TRP A:80 , HIS A:111BINDING SITE FOR RESIDUE CL A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GAB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GAB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GAB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GAB)

(-) Exons   (0, 0)

(no "Exon" information available for 4GAB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4gaba_ A: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee..eee.......hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhh.......hhhhhhhhhh.........hhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gab A   1 MATFVELSTKAKMPIVGLGTWKSPLGKVKEAVKVAIDAGYRHIDCAYVYQNEHEVGEAIQEKIQEKAVKREDLFIVSKLWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHWPQGFKSGDDLFPKDDKGNAIGGKATFLDAWEAMEELVDEGLVKALGVSNFSHFQIEKLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTAAQVLIRFHIQRNVIVIPKSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNLLQSSHLEDYPFNAEY 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GAB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GAB)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O60218: 1zua 4ga8 4gq0 4gqg 4i5x 4icc 4jih 4jii 4wev 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5liy 5m2f

(-) Related Entries Specified in the PDB File

1zua