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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ALDOSE REDUCTASE COMPLEXED WITH NADP+ AND JF0064
 
Authors :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, S. Porte, A. R. De Lera, M. J. J. A. De La Fuente, G. Klebe, J. Farres, X. Pares, A. Podjarny
Date :  18 Dec 12  (Deposition) - 19 Mar 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Aldose Reductase, Oxidoreductase, Diabetes, Halogenated Compound, Cytosolic, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, S. Porte, A. R. De Lera, M. J. Martin, S. Manzanaro, J. A. De La Fuente, F. Terwesten, M. Betz, G. Klebe, J. Farres, X. Pares, A. Podjarny
Identification Of A Novel Polyfluorinated Compound As A Lea To Inhibit The Human Enzymes Aldose Reductase And Akr1B10: Structure Determination Of Both Ternary Complexes And Implications For Drug Design.
Acta Crystallogr. , Sect. D V. 70 889 2014
PubMed-ID: 24598757  |  Reference-DOI: 10.1107/S1399004713033452

(-) Compounds

Molecule 1 - ALDOSE REDUCTASE
    ChainsA
    EC Number1.1.1.21
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneAKR1B1, ALDR1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAR, ALDEHYDE REDUCTASE, ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
164I1Ligand/Ion2,2',3,3',5,5',6,6'-OCTAFLUOROBIPHENYL-4,4'-DIOL
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , HIS A:110 , SER A:159 , ASN A:160 , GLN A:183 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , CYS A:298 , 64I A:402 , HOH A:600 , HOH A:1134BINDING SITE FOR RESIDUE NAP A 401
2AC2SOFTWARETRP A:20 , TYR A:48 , TRP A:79 , HIS A:110 , TRP A:111 , TRP A:219 , CYS A:298 , ALA A:299 , LEU A:300 , NAP A:401 , HOH A:585 , HOH A:649 , HOH A:683 , HOH A:986BINDING SITE FOR RESIDUE 64I A 402

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4igsa_ A: Aldose reductase (aldehyde reductase)                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeee..........................hhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4igs A   0 MASRILLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF 315
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALDR_HUMAN | P151211abn 1ads 1az1 1az2 1ef3 1el3 1iei 1mar 1pwl 1pwm 1t40 1t41 1us0 1x96 1x97 1x98 1xgd 1z3n 1z89 1z8a 2acq 2acr 2acs 2acu 2agt 2dux 2duz 2dv0 2f2k 2fz8 2fz9 2fzb 2fzd 2hv5 2hvn 2hvo 2i16 2i17 2ikg 2ikh 2iki 2ikj 2ine 2inz 2ipw 2iq0 2iqd 2is7 2isf 2j8t 2nvc 2nvd 2pd5 2pd9 2pdb 2pdc 2pdf 2pdg 2pdh 2pdi 2pdj 2pdk 2pdl 2pdm 2pdn 2pdp 2pdq 2pdu 2pdw 2pdx 2pdy 2pev 2pf8 2pfh 2pzn 2qxw 2r24 3bcj 3dn5 3g5e 3ghr 3ghs 3ght 3ghu 3lbo 3ld5 3len 3lep 3lqg 3lql 3lz3 3lz5 3m0i 3m4h 3m64 3mb9 3mc5 3onb 3onc 3p2v 3q65 3q67 3rx2 3rx3 3rx4 3s3g 3t42 3u2c 3v35 3v36 4gca 4gq0 4jir 4lau 4laz 4lb3 4lb4 4lbr 4lbs 4nkc 4pr4 4prr 4prt 4puu 4puw 4q7b 4qbx 4qr6 4qx4 4qxi 4rpq 4xzh 4xzi 4ys1 4yu1 5ha7

(-) Related Entries Specified in the PDB File

1us0 2j8t 4icc 4ice 4icf