Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF AKR1B10 COMPLEXED WITH NADP+ AND CAFFEIC ACID PHENETHYL ESTER
 
Authors :  Z. Liping, Z. Xuehua, C. Shangke, Z. Jing, H. Xiaopeng
Date :  22 Aug 12  (Deposition) - 28 Aug 13  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Tim Barrel, Nadp-Dependant Oxidoreductase, Caffeic Acid Phenethyl Ester And Nadp+, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Liping, Z. Xuehua, C. Shangke, Z. Jing
Crystal Structure Of Akr1B10 Complexed With Nadp+ And Caffeic Acid Phenethyl Ester
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    Chains: A
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AKR1B10
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: HUMAN
    Synonym: ARL-1, ALDOSE REDUCTASE-LIKE, ALDOSE REDUCTASE-RELATED PROTEIN, ARP, HARP, SMALL INTESTINE REDUCTASE, SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2QAP1Ligand/Ion2-PHENYLETHYL (2E)-3-(3,4-DIHYDROXYPHENYL)PROP-2-ENOATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:21 , TYR A:49 , HIS A:111 , PHE A:123 , PRO A:124 , LYS A:125 , LEU A:302 , NAP A:402BINDING SITE FOR RESIDUE QAP A 401
2AC2SOFTWAREGLY A:19 , THR A:20 , TRP A:21 , LYS A:22 , ASP A:44 , TYR A:49 , HIS A:111 , SER A:160 , ASN A:161 , GLN A:184 , TYR A:210 , SER A:211 , PRO A:212 , LEU A:213 , GLY A:214 , SER A:215 , PRO A:216 , ASP A:217 , ALA A:246 , ILE A:261 , PRO A:262 , LYS A:263 , SER A:264 , VAL A:265 , THR A:266 , ARG A:269 , GLU A:272 , ASN A:273 , QAP A:401 , HOH A:525 , HOH A:542 , HOH A:573 , HOH A:579 , HOH A:672BINDING SITE FOR RESIDUE NAP A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GQ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GQ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GQ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4GQ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4gq0a_ A: Aldose reductase (aldehyde reductase)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee.....eee..eee.......hhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhh......eeee..........................hhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh..................hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gq0 A  -1 SHMATFVELSTKAKMPIVGLGTWKSPLGKVKEAVKVAIDAGYRHIDCAYVYQNEHEVGEAIQEKIQEKAVKREDLFIVSKLWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHWPQGFKSGDDLFPKDDKGNAIGGKATFLDAWEAMEELVDEGLVKALGVSNFSHFQIEKLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTAAQVLIRFHIQRNVIVIPKSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNVLQSSHLEDYPFDAEY 316
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQ0)

(-) Gene Ontology  (50, 57)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    QAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4gq0)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4gq0
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  AK1BA_HUMAN | O60218
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  ALDR_HUMAN | P15121
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  AK1BA_HUMAN | O60218
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ALDR_HUMAN | P15121
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O60218: 1zua 4ga8 4gab 4gqg 4i5x 4icc 4jih 4jii 4wev 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5liy 5m2f
        ALDR_HUMAN | P15121: 1abn 1ads 1az1 1az2 1ef3 1el3 1iei 1mar 1pwl 1pwm 1t40 1t41 1us0 1x96 1x97 1x98 1xgd 1z3n 1z89 1z8a 2acq 2acr 2acs 2acu 2agt 2dux 2duz 2dv0 2f2k 2fz8 2fz9 2fzb 2fzd 2hv5 2hvn 2hvo 2i16 2i17 2ikg 2ikh 2iki 2ikj 2ine 2inz 2ipw 2iq0 2iqd 2is7 2isf 2j8t 2nvc 2nvd 2pd5 2pd9 2pdb 2pdc 2pdf 2pdg 2pdh 2pdi 2pdj 2pdk 2pdl 2pdm 2pdn 2pdp 2pdq 2pdu 2pdw 2pdx 2pdy 2pev 2pf8 2pfh 2pzn 2qxw 2r24 3bcj 3dn5 3g5e 3ghr 3ghs 3ght 3ghu 3lbo 3ld5 3len 3lep 3lqg 3lql 3lz3 3lz5 3m0i 3m4h 3m64 3mb9 3mc5 3onb 3onc 3p2v 3q65 3q67 3rx2 3rx3 3rx4 3s3g 3t42 3u2c 3v35 3v36 4gca 4igs 4jir 4lau 4laz 4lb3 4lb4 4lbr 4lbs 4nkc 4pr4 4prr 4prt 4puu 4puw 4q7b 4qbx 4qr6 4qx4 4qxi 4rpq 4xzh 4xzi 4ys1 4yu1 5ha7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GQ0)