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(-) Description

Title :  HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND WY14643 IN SPACE GROUP P212121
 
Authors :  M. R. Sawaya, D. Cascio, G. K. Balendiran
Date :  30 Dec 15  (Deposition) - 28 Sep 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha/Beta Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. R. Sawaya, M. Verma, V. Balendiran, N. P. Rath, D. Cascio, G. K. Balendiran
Characterization Of Wy 14, 643 And Its Complex With Aldose Reductase.
Sci Rep V. 6 34394 2016
PubMed-ID: 27721416  |  Reference-DOI: 10.1038/SREP34394

(-) Compounds

Molecule 1 - ALDOSE REDUCTASE
    Chains: A, B
    EC Number: 1.1.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: AKR1B1, ALDR1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AR,ALDEHYDE REDUCTASE,ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO48Ligand/IonSULFATE ION
3WY12Ligand/Ion2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO44Ligand/IonSULFATE ION
3WY11Ligand/Ion2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO44Ligand/IonSULFATE ION
3WY11Ligand/Ion2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , HIS A:110 , SER A:159 , ASN A:160 , GLN A:183 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , WY1 A:402 , HOH A:516 , HOH A:521 , HOH A:540 , HOH A:698 , GLN B:26 , HOH B:703binding site for residue NAP A 401
02AC2SOFTWARETRP A:20 , VAL A:47 , TYR A:48 , HIS A:110 , TRP A:111 , PHE A:122 , TRP A:219 , NAP A:401 , HOH A:631 , HOH A:641binding site for residue WY1 A 402
03AC3SOFTWAREARG A:63 , HOH A:676 , HOH A:694 , HIS B:163binding site for residue SO4 A 403
04AC4SOFTWAREALA A:1 , SER A:2 , ARG A:3binding site for residue SO4 A 404
05AC5SOFTWAREARG A:3 , LYS A:11binding site for residue SO4 A 405
06AC6SOFTWARELYS A:239 , SER A:281 , GLN A:283binding site for residue SO4 A 406
07AC7SOFTWAREGLN A:26 , HOH A:516 , GLY B:18 , THR B:19 , TRP B:20 , LYS B:21 , ASP B:43 , TYR B:48 , HIS B:110 , SER B:159 , ASN B:160 , GLN B:183 , TYR B:209 , SER B:210 , PRO B:211 , LEU B:212 , GLY B:213 , SER B:214 , PRO B:215 , ASP B:216 , ALA B:245 , ILE B:260 , PRO B:261 , LYS B:262 , SER B:263 , VAL B:264 , THR B:265 , ARG B:268 , GLU B:271 , ASN B:272 , WY1 B:402 , HOH B:524 , HOH B:601 , HOH B:680 , HOH B:683binding site for residue NAP B 401
08AC8SOFTWARETRP B:20 , VAL B:47 , TYR B:48 , HIS B:110 , TRP B:111 , PHE B:122 , TRP B:219 , NAP B:401 , HOH B:609 , HOH B:622binding site for residue WY1 B 402
09AC9SOFTWAREHIS A:163 , ARG B:63 , HOH B:679 , HOH B:702binding site for residue SO4 B 403
10AD1SOFTWAREALA B:1 , SER B:2 , ARG B:3 , HOH B:705binding site for residue SO4 B 404
11AD2SOFTWAREARG B:3 , LYS B:11binding site for residue SO4 B 405
12AD3SOFTWARELYS B:242 , GLN B:246 , LYS B:274 , HOH B:597binding site for residue SO4 B 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HA7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HA7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HA7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HA7)

(-) Exons   (0, 0)

(no "Exon" information available for 5HA7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeee..........................hhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ha7 A   0 MASRILLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF 315
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309      


Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeee..........................hhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ha7 B   0 MASRILLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF 315
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HA7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HA7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HA7)

(-) Gene Ontology  (39, 39)

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  5ha7
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  ALDR_HUMAN | P15121
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALDR_HUMAN | P15121: 1abn 1ads 1az1 1az2 1ef3 1el3 1iei 1mar 1pwl 1pwm 1t40 1t41 1us0 1x96 1x97 1x98 1xgd 1z3n 1z89 1z8a 2acq 2acr 2acs 2acu 2agt 2dux 2duz 2dv0 2f2k 2fz8 2fz9 2fzb 2fzd 2hv5 2hvn 2hvo 2i16 2i17 2ikg 2ikh 2iki 2ikj 2ine 2inz 2ipw 2iq0 2iqd 2is7 2isf 2j8t 2nvc 2nvd 2pd5 2pd9 2pdb 2pdc 2pdf 2pdg 2pdh 2pdi 2pdj 2pdk 2pdl 2pdm 2pdn 2pdp 2pdq 2pdu 2pdw 2pdx 2pdy 2pev 2pf8 2pfh 2pzn 2qxw 2r24 3bcj 3dn5 3g5e 3ghr 3ghs 3ght 3ghu 3lbo 3ld5 3len 3lep 3lqg 3lql 3lz3 3lz5 3m0i 3m4h 3m64 3mb9 3mc5 3onb 3onc 3p2v 3q65 3q67 3rx2 3rx3 3rx4 3s3g 3t42 3u2c 3v35 3v36 4gca 4gq0 4igs 4jir 4lau 4laz 4lb3 4lb4 4lbr 4lbs 4nkc 4pr4 4prr 4prt 4puu 4puw 4q7b 4qbx 4qr6 4qx4 4qxi 4rpq 4xzh 4xzi 4ys1 4yu1

(-) Related Entries Specified in the PDB File

3q65 3Q65 CONTAINS THE SAME PROTEIN BUT WITHOUT WY14643 INHIBITOR BOUND.